SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS22885 FitnessBrowser__Koxy:BWI76_RS22885 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

6st0A Taurine abc transporter substrate binding protein taua from e. Coli in complex with n-(2-acetamido)-2-aminoethanesulfonic acid (see paper)
29% identity, 58% coverage: 48:227/313 of query aligns to 21:201/298 of 6st0A

query
sites
6st0A
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Sites not aligning to the query:

6ssyA Taurine abc transporter substrate binding protein taua from e. Coli in complex with 2-aminoethylphosphonic acid (see paper)
29% identity, 58% coverage: 48:227/313 of query aligns to 21:201/298 of 6ssyA

query
sites
6ssyA
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D
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N
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A
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K

Sites not aligning to the query:

Query Sequence

>BWI76_RS22885 FitnessBrowser__Koxy:BWI76_RS22885
MLRLSRPALLLLLAGLSTSALAKAPETVNIGYQKANIFALLKYRGTLDESFKKQGIAVRW
IEFPAGPQMLEGLNVGSIDLAATGDAPPAFAQAAQADLVYLAHSPANPKTEAIVVAENSA
IKSVADLKGKRVGLNKGSDVNYLLVTALEKAGLSYKDITPVYLPPADARAAFQRGAIDAW
VIWDPFLAEVETNAKARQIRNAEGLVPHYTFYLASRKFADTYPDTAKQVVDELGKLSEWA
NGHQDDAAGILSTSTGLDKAIWLKTLARLPYGAERMTPAVYNEQQALADTFTRIGLLPVK
VDVRSATWSLDKQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory