SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS23150 FitnessBrowser__Koxy:BWI76_RS23150 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

Q9XDN5 Phosphate propanoyltransferase; Phosphate acyltransferase PduL; Phosphotransacylase PduL; PTAC; Propanediol utilization protein PduL; EC 2.3.1.222 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
93% identity, 100% coverage: 1:210/210 of query aligns to 1:210/210 of Q9XDN5

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Q9XDN5
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Q21A54 Phosphate propanoyltransferase; Phosphate acyltransferase PduL; Phosphotransacylase PduL; PTAC; Propanediol utilization protein PduL; EC 2.3.1.222 from Rhodopseudomonas palustris (strain BisB18) (see paper)
53% identity, 82% coverage: 22:194/210 of query aligns to 40:212/226 of Q21A54

query
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Q21A54
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A

Sites not aligning to the query:

5cupA Structure of rhodopseudomonas palustris pdul - phosphate bound form (see paper)
53% identity, 82% coverage: 22:194/210 of query aligns to 5:177/189 of 5cupA

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5cupA
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A

5cuoB Structure of rhodopseudomonas palustris pdul - coa bound form (see paper)
53% identity, 82% coverage: 22:194/210 of query aligns to 5:177/189 of 5cuoB

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5cuoB
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V
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A

Query Sequence

>BWI76_RS23150 FitnessBrowser__Koxy:BWI76_RS23150
MDKQLLESTVSKVLDEMRLRPIPLGVSNRHIHLSAADYERLFPGHPISEKKALLQPGQYA
AEQTVTLVGPKGQLKNVRLLGPLRSVSQVEISRTDARTLGVAAPLRMSGNLKGTPGIRLV
SPFGELELTSGVIVAQRHIHMSPLDALILRVAHGDRVSVAIEGDERGLIFNNVAVRVSPD
MRLEMHIDTDEANAAGADSPQAFARLVGPR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory