Comparing BWI76_RS23380 BWI76_RS23380 sugar ABC transporter permease to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
32% identity, 85% coverage: 13:263/296 of query aligns to 37:288/313 of P94529
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
32% identity, 94% coverage: 2:279/296 of query aligns to 4:277/285 of 7cagA
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
26% identity, 80% coverage: 45:282/296 of query aligns to 257:510/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
26% identity, 78% coverage: 45:276/296 of query aligns to 242:489/490 of 4ki0F
>BWI76_RS23380 BWI76_RS23380 sugar ABC transporter permease
MNENKMLGLAWISPYIIGLIVFTAFPFVSSFFLSFTEYDLMSPPVFNGIENYRYMLTEDG
LFWKSMGVTFAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAYYIPSILGSSVAIAVL
WRALFAIDGLLNSFIGVLGFDPVNWLGEPSLALMSVTLLRVWQFGSAMVIFLAALQNVPQ
SQYEAAMIDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTGPYVITGGGPTYSTY
LFSLYIYDTAFKYFDMGYGAALAWVLFLVVAVFAAIAFKSSKYWVFYSADKGGKNG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory