SitesBLAST – Find functional sites

 

SitesBLAST

Comparing BWI76_RS24170 FitnessBrowser__Koxy:BWI76_RS24170 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AFF4 Nucleoside permease NupG; Nucleoside-transport system protein NupG from Escherichia coli (strain K12) (see paper)
90% identity, 100% coverage: 1:418/418 of query aligns to 1:418/418 of P0AFF4

query
sites
P0AFF4
M
 
M
N
 
N
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L
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K
L
 
L
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Q
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L
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K
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I
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L
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L
T
 
T
T
 
T
L
 
L
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G
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S
Y
 
Y
M
 
M
F
 
F
V
 
V
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L
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K
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F
D
 
D
G
 
G
A
 
A
A
 
S
I
 
I
G
 
G
A
 
A
V
 
V
Y
 
Y
S
 
S
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S
L
 
L
G
 
G
I
 
I
A
 
A
A
 
A
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V
F
 
F
M
 
M
P
 
P
T
 
A
L
 
L
L
 
L
G
 
G
I
 
I
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V
A
 
A
D
 
D
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K
W
 
W
I
 
L
S
 
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V
Y
 
Y
A
 
A
I
 
I
C
 
C
H
 
H
L
 
T
V
 
I
G
 
G
A
 
A
L
 
I
T
 
T
L
 
L
W
 
F
L
 
M
A
 
A
A
 
A
Q
 
Q
V
 
V
T
 
T
T
 
T
P
 
P
G
 
E
E
 
A
M
 
M
F
 
F
L
 
L
V
 
V
I
 
I
L
 
L
L
 
I
N
 
N
S
 
S
L
 
F
A
 
A
Y
 
Y
M
 
M
P
 
P
T
 
T
L
 
L
G
 
G
L
 
L
I
 
I
N
 
N
T
 
T
I
 
I
S
 
S
Y
 
Y
Y
 
Y
R
 
R
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L
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Q
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N
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A
D
 
G
M
 
M
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D
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I
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D
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P
P
 
P
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I
R
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R
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I
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W
G
 
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T
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I
 
I
G
 
G
F
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F
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I
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M
A
 
A
M
 
M
W
 
W
A
 
V
V
 
V
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S
F
 
L
S
 
S
G
 
G
F
 
F
E
 
E
L
 
L
S
 
S
H
 
H
M
 
M
Q
 
Q
L
 
L
Y
 
Y
I
 
I
G
 
G
A
 
A
A
 
A
L
 
L
S
 
S
L
 
A
L
 
I
L
 
L
V
 
V
L
 
L
F
 
F
T
 
T
L
 
L
T
 
T
L
 
L
P
 
P
H
 
H
I
 
I
P
 
P
V
 
V
A
 
A
N
 
K
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Q
Q
 
Q
K
 
A
N
 
N
Q
 
Q
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S
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W
T
 
T
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T
M
 
L
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G
L
 
L
D
 
D
A
 
A
F
 
F
A
 
A
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L
F
 
F
K
 
K
N
 
N
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K
R
 
R
M
 
M
A
 
A
I
 
I
F
 
F
F
 
F
I
 
I
F
 
F
S
 
S
M
 
M
M
 
L
L
 
L
G
 
G
A
 
A
E
 
E
L
 
L
Q
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Q
I
 
I
T
 
T
N
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N
M
 
M
F
 
F
G
 
G
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N
T
 
T
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F
L
 
L
H
 
H
S
 
S
F
 
F
D
 
D
K
 
K
D
 
D
P
 
P
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M
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F
A
 
A
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M
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Q
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E
T
 
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I
L
 
L
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P
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F
F
 
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L
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S
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R
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Y
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Y
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A
F
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F
D
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D
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F
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F
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F
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P
E
 
A
I
 
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A
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A
 
A
Q
 
Q
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G
M
 
M
F
 
F
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M
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Q
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V
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W
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L
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I
F
 
F
A
 
A
G
 
G
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Y
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S
L
 
V
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V
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L
A
 
A
F
 
F
A
 
A
F
 
F
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M
A
 
A
L
 
M
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F
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K
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H

Query Sequence

>BWI76_RS24170 FitnessBrowser__Koxy:BWI76_RS24170
MNLKLQLKVLSFLQFCLWGSWLTTLGSYMFVTLKFDGAAIGAVYSSLGIAAVFMPTLLGI
VADKWISAKWVYAICHLVGALTLWLAAQVTTPGEMFLVILLNSLAYMPTLGLINTISYYR
LQSADMDIVTDFPPIRIWGTIGFILAMWAVSFSGFELSHMQLYIGAALSLLLVLFTLTLP
HIPVANQQKNQSWTAMLGLDAFALFKNKRMAIFFIFSMMLGAELQITNMFGNTFLHSFDK
DPLFASSFIVQHASVMMSISQISETLFILTIPFFLSRYGIKNVMLISIVAWMLRFGLFAY
GDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVRPEIRASAQGMFLMMTNGFGCIL
GGMVSGKVVEHFTVEGITDWQTVWLIFAGYSLVLAFAFVALFKYKHVRVPTGAQTVAH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory