Comparing BWI76_RS26865 FitnessBrowser__Koxy:BWI76_RS26865 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
37% identity, 93% coverage: 17:328/337 of query aligns to 9:321/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
36% identity, 93% coverage: 17:328/337 of query aligns to 8:310/310 of 4fwiB
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 89% coverage: 20:318/337 of query aligns to 3:305/343 of P30750
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 89% coverage: 20:318/337 of query aligns to 4:306/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 89% coverage: 20:318/337 of query aligns to 4:306/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 77% coverage: 20:278/337 of query aligns to 4:259/344 of 6cvlD
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
35% identity, 76% coverage: 10:265/337 of query aligns to 1:247/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
35% identity, 76% coverage: 10:265/337 of query aligns to 1:247/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
35% identity, 76% coverage: 10:265/337 of query aligns to 1:247/250 of 7z16I
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
30% identity, 87% coverage: 32:323/337 of query aligns to 17:321/330 of P0AAH4
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 68% coverage: 35:263/337 of query aligns to 14:237/240 of 4ymuJ
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
34% identity, 68% coverage: 35:263/337 of query aligns to 16:239/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
34% identity, 68% coverage: 35:263/337 of query aligns to 16:239/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
34% identity, 68% coverage: 35:263/337 of query aligns to 16:239/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
34% identity, 68% coverage: 35:263/337 of query aligns to 16:239/242 of 2oljA
Sites not aligning to the query:
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
34% identity, 68% coverage: 36:265/337 of query aligns to 16:252/258 of 1b0uA
Sites not aligning to the query:
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
34% identity, 68% coverage: 36:265/337 of query aligns to 20:256/258 of P02915
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
32% identity, 66% coverage: 42:265/337 of query aligns to 46:266/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
32% identity, 66% coverage: 42:265/337 of query aligns to 46:266/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
32% identity, 65% coverage: 42:259/337 of query aligns to 46:260/260 of 7ahdC
Sites not aligning to the query:
>BWI76_RS26865 FitnessBrowser__Koxy:BWI76_RS26865
MSTHEATTQQPLLLATDLKKYYPVKKGLFAPERLVKALDGVSFTLERGKTLAVVGESGCG
KSTLGRLLTMIEIPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQ
ILEEPLQINTSLSKEQRREKALAMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDP
DVVIADEPVSALDVSVRAQVLNLMMDLQQDLGLSYVFISHDLSVVEHIADEVMVMYLGRC
VEKGSKDQIFNNPQHPYTQALLSATPRLNPDDRRERIKLTGELPSPLNPPPGCAFNARCR
RRFGPCTQLQPQLKDYGGQLVACFAVDEDQNGEKPLS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory