Comparing BWI76_RS27030 FitnessBrowser__Koxy:BWI76_RS27030 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
91% identity, 93% coverage: 24:330/330 of query aligns to 1:307/313 of 3ma0A
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
76% identity, 92% coverage: 24:327/330 of query aligns to 2:305/310 of 4ywhA
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
39% identity, 92% coverage: 28:330/330 of query aligns to 5:328/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
39% identity, 92% coverage: 28:330/330 of query aligns to 5:328/329 of 3urmA
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
36% identity, 92% coverage: 28:330/330 of query aligns to 5:328/329 of 4wwhA
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
35% identity, 92% coverage: 28:330/330 of query aligns to 3:323/324 of 4ys6A
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
32% identity, 93% coverage: 24:330/330 of query aligns to 2:336/340 of 4rxuA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 88% coverage: 28:316/330 of query aligns to 15:372/374 of 6s3tA
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 88% coverage: 28:316/330 of query aligns to 13:370/373 of 6ruxA
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
33% identity, 69% coverage: 50:278/330 of query aligns to 25:248/274 of 2ioyA
Sites not aligning to the query:
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
26% identity, 88% coverage: 27:317/330 of query aligns to 4:289/297 of 4ry9B
4ry9A Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
26% identity, 88% coverage: 27:317/330 of query aligns to 4:289/297 of 4ry9A
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
30% identity, 68% coverage: 41:263/330 of query aligns to 30:244/287 of 5dteB
Sites not aligning to the query:
A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
31% identity, 59% coverage: 62:257/330 of query aligns to 70:261/349 of A0QYB5
Sites not aligning to the query:
4rsmA Crystal structure of carbohydrate transporter msmeg_3599 from mycobacterium smegmatis str. Mc2 155, target efi-510970, in complex with d-threitol (see paper)
31% identity, 59% coverage: 62:257/330 of query aligns to 38:229/315 of 4rsmA
Sites not aligning to the query:
A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
30% identity, 59% coverage: 62:257/330 of query aligns to 70:261/349 of A0QYB3
Sites not aligning to the query:
5hkoA Crystal structure of abc transporter solute binding protein msmeg_3598 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with l-sorbitol
30% identity, 59% coverage: 62:257/330 of query aligns to 37:228/314 of 5hkoA
Sites not aligning to the query:
4rs3A Crystal structure of carbohydrate transporter a0qyb3 from mycobacterium smegmatis str. Mc2 155, target efi-510969, in complex with xylitol (see paper)
30% identity, 59% coverage: 62:257/330 of query aligns to 37:228/315 of 4rs3A
Sites not aligning to the query:
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
28% identity, 71% coverage: 46:279/330 of query aligns to 25:257/291 of 4rxmA
Sites not aligning to the query:
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
28% identity, 71% coverage: 46:279/330 of query aligns to 23:255/288 of 4rxmB
Sites not aligning to the query:
>BWI76_RS27030 FitnessBrowser__Koxy:BWI76_RS27030
MKIKNLCLTLCASLLLTSLSGIAKEVKIGMAIDDLRLERWQKDRDIFVNKAESLGAKVFV
QSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRLINNAD
IDFYISFNNEKVGEMQAQSLVDKVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDEGK
IKIVGDQWVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLAGKVA
ISGQDADLAGVKRIIAGTQTMTVYKPITTLATTAAEIAVELGNDKQPQADSSLNNGLKDV
PSRLLTPIEVNKDNIDQTVIKDGFHKKSEL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory