Comparing CA265_RS03100 FitnessBrowser__Pedo557:CA265_RS03100 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 18 hits to proteins with known functional sites (download)
7cdyA Crystal structure of glucose dehydrogenase
40% identity, 84% coverage: 62:400/403 of query aligns to 3:343/346 of 7cdyA
P75804 Aldose sugar dehydrogenase YliI; Asd; Soluble aldose sugar dehydrogenase YliI; EC 1.1.5.- from Escherichia coli (strain K12) (see paper)
39% identity, 85% coverage: 60:403/403 of query aligns to 25:370/371 of P75804
2g8sA Crystal structure of the soluble aldose sugar dehydrogenase (asd) from escherichia coli in the apo-form (see paper)
38% identity, 85% coverage: 60:403/403 of query aligns to 3:348/348 of 2g8sA
7cgzA Glucose dehydrogenase
38% identity, 84% coverage: 62:400/403 of query aligns to 3:318/321 of 7cgzA
2ismB Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (ttha0570) from thermus theromophilus hb8
35% identity, 83% coverage: 60:394/403 of query aligns to 2:315/333 of 2ismB
3dasA Structure of the pqq-bound form of aldose sugar dehydrogenase (adh) from streptomyces coelicolor
30% identity, 83% coverage: 62:394/403 of query aligns to 11:314/334 of 3dasA
Sites not aligning to the query:
3a9hA Crystal structure of pqq-dependent sugar dehydrogenase holo-form (see paper)
30% identity, 83% coverage: 62:394/403 of query aligns to 6:316/338 of 3a9hA
Sites not aligning to the query:
3a9gA Crystal structure of pqq-dependent sugar dehydrogenase apo-form (see paper)
30% identity, 83% coverage: 62:394/403 of query aligns to 6:316/338 of 3a9gA
1cq1A Soluble quinoprotein glucose dehydrogenase from acinetobacter calcoaceticus in complex with pqqh2 and glucose (see paper)
24% identity, 83% coverage: 60:393/403 of query aligns to 17:418/444 of 1cq1A
1c9uA Crystal structure of the soluble quinoprotein glucose dehydrogenase in complex with pqq (see paper)
24% identity, 83% coverage: 60:393/403 of query aligns to 17:418/444 of 1c9uA
1cruA Soluble quinoprotein glucose dehydrogenase from acinetobacter calcoaceticus in complex with pqq and methylhydrazine (see paper)
24% identity, 83% coverage: 60:393/403 of query aligns to 17:422/448 of 1cruA
P13650 Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus (see paper)
23% identity, 83% coverage: 60:393/403 of query aligns to 41:448/478 of P13650
5minB Apo form of the soluble pqq-dependent glucose dehydrogenase from acinetobacter calcoaceticus
23% identity, 83% coverage: 60:393/403 of query aligns to 17:424/453 of 5minB
7pgnA Hhp-c in complex with glycosaminoglycan mimic sos (see paper)
23% identity, 44% coverage: 83:258/403 of query aligns to 30:219/437 of 7pgnA
Sites not aligning to the query:
7pgnB Hhp-c in complex with glycosaminoglycan mimic sos (see paper)
23% identity, 44% coverage: 83:258/403 of query aligns to 29:218/438 of 7pgnB
Sites not aligning to the query:
7pgmB Hhip-c in complex with heparin (see paper)
24% identity, 44% coverage: 83:258/403 of query aligns to 29:213/427 of 7pgmB
Sites not aligning to the query:
2wfxB Crystal structure of the complex between human hedgehog-interacting protein hip and sonic hedgehog in the presence of calcium (see paper)
21% identity, 45% coverage: 83:264/403 of query aligns to 28:219/417 of 2wfxB
Sites not aligning to the query:
Q96QV1 Hedgehog-interacting protein; HHIP; HIP from Homo sapiens (Human) (see 3 papers)
22% identity, 45% coverage: 83:264/403 of query aligns to 242:444/700 of Q96QV1
Sites not aligning to the query:
>CA265_RS03100 FitnessBrowser__Pedo557:CA265_RS03100
MNLFNNKTLGILLAGITLNCANVACVSAQNPVETNEPSADYKPAFAGQTRIAGVKTKTPL
DIKIINEKLENPWAISVLPNGGFLITQKQGTMVILTPDGKLSKKITGLPKVDPSGQGGLL
DVTLDPNFAKNRMIYWAYSEPQDKGVLLAIAKGKLAANETTIENQSIIYRATPAYGGKLQ
YGSRIVFDKNGNLFVSTGERSGSDIRIQAQYLNSSLGKILHLTTDGKAVANGPFAGKADA
KPEIYAYGLRNPDGLAINPLTGDLWEAEFGPKGGDEVNIIKPGKNYGWPIITYGTEYSGK
KVGDGIQQKEGMEQPVYYWNPSISPGCIAFYNSSSIAEWKGNLFVGGLGGSHIIRLVIKD
DKIVGEERLLEGKGERFRDMVEGKDGALYSVTDNGHLFRIAKK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory