Comparing CA265_RS04345 CA265_RS04345 lipoprotein-releasing system ATP-binding protein LolD to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
47% identity, 99% coverage: 1:213/216 of query aligns to 5:221/233 of P75957
7mdyC Lolcde nucleotide-bound
47% identity, 99% coverage: 1:213/216 of query aligns to 2:218/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
47% identity, 99% coverage: 1:213/216 of query aligns to 2:218/222 of 7arlD
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
49% identity, 100% coverage: 1:216/216 of query aligns to 3:217/223 of 2pclA
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
47% identity, 99% coverage: 1:213/216 of query aligns to 4:220/229 of 7v8iD
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
44% identity, 100% coverage: 1:216/216 of query aligns to 4:222/648 of P75831
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
45% identity, 99% coverage: 1:213/216 of query aligns to 1:221/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
45% identity, 99% coverage: 1:213/216 of query aligns to 1:221/230 of 1l2tA
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
43% identity, 94% coverage: 14:216/216 of query aligns to 20:221/615 of 5lilA
Sites not aligning to the query:
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
43% identity, 94% coverage: 14:216/216 of query aligns to 20:221/592 of 5lj7A
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
45% identity, 97% coverage: 7:215/216 of query aligns to 9:220/226 of 5xu1B
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
44% identity, 94% coverage: 13:216/216 of query aligns to 20:222/650 of 5ws4A
8g4cB Bceabs atpgs high res tm (see paper)
40% identity, 99% coverage: 1:213/216 of query aligns to 3:219/248 of 8g4cB
7tchB Bceab e169q variant atp-bound conformation (see paper)
39% identity, 99% coverage: 1:213/216 of query aligns to 2:218/245 of 7tchB
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
44% identity, 100% coverage: 1:216/216 of query aligns to 1:215/240 of 4ymuJ
3c4jA Abc protein artp in complex with atp-gamma-s
40% identity, 100% coverage: 1:216/216 of query aligns to 3:217/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
40% identity, 100% coverage: 1:216/216 of query aligns to 3:217/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
40% identity, 100% coverage: 1:216/216 of query aligns to 3:217/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
40% identity, 100% coverage: 1:216/216 of query aligns to 3:217/242 of 2oljA
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
40% identity, 99% coverage: 1:213/216 of query aligns to 1:213/219 of 8w6iD
>CA265_RS04345 CA265_RS04345 lipoprotein-releasing system ATP-binding protein LolD
MLKATGIRKSYGNLQILKGVNFEVQKGEIVSIIGPSGAGKSTLLHILGTLDKPDDGSVQL
KGTVINKLNGDLLSTFRNQNIGFVFQFHHLLPEFSAIENICIPAFIAKTNKKQAETRAFE
LLDLFGLKDRAQHKPNQLSGGEQQRVAIARALINNPSIILADEPSGNLDSENAAGLHQLF
VSLRDNFHQTFVIVTHNEHLAKTSDRVVSMKDGLIV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory