Comparing CA265_RS04675 FitnessBrowser__Pedo557:CA265_RS04675 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
43% identity, 94% coverage: 11:419/436 of query aligns to 14:429/438 of P11551
Sites not aligning to the query:
>CA265_RS04675 FitnessBrowser__Pedo557:CA265_RS04675
MSHTPSTNFQVSDTPKNGKGYLFPLILVTSLFFFWGFVHNLDPVLIPHLRKAFQLNVFES
TLVDSSVFIAYFLLALPAGYIMRKYGYKSGIILGLVLFAIGCLLFIPAANTAQYIFFLGA
LFIIACGLTFLETAANPYVTVLGPPETATQRLNFSQSFNGLAAFLAPVLGGKFIFTEVKY
TDAQLAKMLPLEKQAYMLEEASTVKAPYLILGILIIVVAILFIFTKLPDIKEEENAQEKS
SFSHVLGHSHLRWAIIGQFFYVGAQVCVLSLFISFVTSSAGISQDAAKWYAGAAGLAFMV
GRFAGTFFMRYVAAHKLLMLYALISAVLTLVSIFASGMITVYALIGVSFFMSIMFPTIFS
LGIAGLGKDTKLGSSLIVMSIVGGAFLPPVLGLISDATHNIQYGYLVPFVCFLVVFYFGW
KGWKPNHIEKEISLEV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory