SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CA265_RS14275 FitnessBrowser__Pedo557:CA265_RS14275 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found no hits to proteins with known functional sites (download)

Query Sequence

>CA265_RS14275 FitnessBrowser__Pedo557:CA265_RS14275
MLNLKKYSILALSLISLSAAAQKAKPLFDGKTLTGWKAVAGVAPYKVEDGMIIGTMTKGT
PNSFLITEKEYGDFILELDVKLEGETTNSGVQTRSHIKPEGNNGKGLVFGRQMEIDPTPR
AWTGGIYDEARRLWLYPLELNPSAKPLYKKNEFNHYKIECIGNETKTWVNGTPVAYVIDT
LDKSGFIGLQVHGIGANLDNDGKKVYFKNINIQTEGLKAKAFPKGIYTVNLTPNTLSAYE
KSEGYKLLFDGKSHAGWVGAYKTTFPAKGWKIADGVISVEPSGGAESTNGGDIVTKAEYA
AFDLSFEFKLTPGANSGVKYFVTLSEKNTGSAIGLEYQVLDDVLHPDAKLGRDGNRTLAS
LYDLMTSKKEARYLRPIGSWNNGRLVVYPNNKVEHYLNGVKVLEYTRGSEEFKKLVAISK
YKDWKNFGEAPKGHILLQDHGNKVDFRTIKIKTL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory