Comparing CA265_RS15045 FitnessBrowser__Pedo557:CA265_RS15045 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
30% identity, 41% coverage: 3:223/535 of query aligns to 16:244/438 of P11551
Sites not aligning to the query:
>CA265_RS15045 FitnessBrowser__Pedo557:CA265_RS15045
MTKDTTKNYGTALYTIITVFFFWGFVAASNGIFIPFCKTHFKLTQFESQLIDFTFYGGYF
IGSLILYFASQASKVDILNKIGYKKGIIAGLIISAGGALLMIPAVHSGSFLFILFAFFVI
ALGFSLQQTAANPFVVALGEPESGAHRLNLAGGINNFGGLMGPVIVSVVLFGTANDAVAK
VVEISSINNLYYILAGLFLGVAIFFGVSKLPDVTSTEKIEASSKPTGPLVVMILGFLMVA
AASPLANLTGISASIFVYSSFVIILGALLFGYFVKKENAASWGAMQYPQLVLGMLAIFMY
VGTEVTIQSNLGALLKLPDFGGLADADIKPYISLYWGSMMIGRWAGAVSAFNLTKMTKNV
LTVIVPFVAFGIILGVNHATGTDVGNLYVYALCIAVMILAVFIGQEKPAKTLAIFGTLGA
IAMIIGLLTTGHVAIFAFVSGGLCCSIMWPSIFSLAITGLGKYTSQGSSFLIMMILGGSI
IPPIQGELADSAGIHNSYIIPVLGFAYLIFFAWKVSGELKKQGIDVENITAEGGH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory