Comparing CA265_RS16230 FitnessBrowser__Pedo557:CA265_RS16230 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
2d0sA Crystal structure of the cytochrome c552 from moderate thermophilic bacterium, hydrogenophilus thermoluteolus (see paper)
32% identity, 12% coverage: 574:650/652 of query aligns to 2:78/79 of 2d0sA
>CA265_RS16230 FitnessBrowser__Pedo557:CA265_RS16230
MRNTFKKLAILALSFSFTTVFAQETPKEEDFFKINKVRVPEGPILEVGGLITLPNGDLGI
STRRGEVYIVENPTSAKPYWRRFAYGLHEILGIAYKNGAIYVAQRGELTKLVDKDQDGKA
DVYETIYAWPLSGHYHEYSFGPKLMPDGTFMVTANVAFGDEEWWRAESRVPMRGWAMNIT
EDGKMSPYAAGFRSPAGIGSIDGQFYYTENQGDWVGSGGLWKVNKGDFMGHPASLRWTNL
PNSPVKLQSDFFYSQIDERRTKNEQGRYIKPENRVNETFKTLFDMKKVFPELRLPSVWLP
YGILGISSAEPVKIPANTFGPFAGQILVGDQGMSIISRIFMETVKGEEQGAAFLFRKGFR
SGVLRLEWGTDGSLFVGETNRGWGSAGDANEGLERLVYNNKTPFEMKAVRAMPDGFEVEF
TMPVDRKSAEDLASYDAESFIYKYHPVYGSPPVNTEKLKISGVKVSADGLKARIIVQNLR
QYYIHTLTLDGLRSQDGFYSLVHPVAYYTLNQIPDGNKLSASEVSTKNSAAPVNVPAKKT
AAPKATGKTPEAKGTTTPAKPAATAKAPTFKEVEGLLTKNTCLACHNQTKRQIGPPFVEI
AKRKYSAEKIFQLIHNPQPQNWPGYSTEMPPMPQVTKAEALKIAGWINSLNK
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory