SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CA265_RS16230 FitnessBrowser__Pedo557:CA265_RS16230 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2d0sA Crystal structure of the cytochrome c552 from moderate thermophilic bacterium, hydrogenophilus thermoluteolus (see paper)
32% identity, 12% coverage: 574:650/652 of query aligns to 2:78/79 of 2d0sA

query
sites
2d0sA
E
 
E
G
 
A
L
 
L
L
 
A
T
 
K
K
 
A
N
 
K
T
 
G
C
|
C
L
 
M
A
 
A
C
|
C
H
|
H
N
 
A
Q
 
I
T
 
D
K
 
K
R
 
K
Q
 
L
I
 
V
G
 
G
P
|
P
P
 
S
F
 
Y
V
 
K
E
 
D
I
 
V
A
 
A
K
 
K
R
 
K
K
x
Y
Y
 
T
S
 
E
A
 
A
E
 
D
-
 
V
-
 
P
K
 
K
I
 
L
F
 
V
Q
 
E
L
x
K
I
x
V
H
 
K
N
 
K
P
 
G
Q
 
G
P
x
A
Q
x
G
N
x
V
W
|
W
P
x
G
G
 
-
Y
 
-
S
 
P
T
x
V
E
 
P
M
|
M
P
|
P
P
 
P
M
x
H
P
 
P
Q
 
Q
V
 
V
T
 
A
K
 
E
A
 
A
E
 
D
A
 
I
L
 
E
K
 
K
I
 
I
A
 
V
G
 
R
W
 
W
I
 
V
N
 
L
S
 
T
L
 
L

Query Sequence

>CA265_RS16230 FitnessBrowser__Pedo557:CA265_RS16230
MRNTFKKLAILALSFSFTTVFAQETPKEEDFFKINKVRVPEGPILEVGGLITLPNGDLGI
STRRGEVYIVENPTSAKPYWRRFAYGLHEILGIAYKNGAIYVAQRGELTKLVDKDQDGKA
DVYETIYAWPLSGHYHEYSFGPKLMPDGTFMVTANVAFGDEEWWRAESRVPMRGWAMNIT
EDGKMSPYAAGFRSPAGIGSIDGQFYYTENQGDWVGSGGLWKVNKGDFMGHPASLRWTNL
PNSPVKLQSDFFYSQIDERRTKNEQGRYIKPENRVNETFKTLFDMKKVFPELRLPSVWLP
YGILGISSAEPVKIPANTFGPFAGQILVGDQGMSIISRIFMETVKGEEQGAAFLFRKGFR
SGVLRLEWGTDGSLFVGETNRGWGSAGDANEGLERLVYNNKTPFEMKAVRAMPDGFEVEF
TMPVDRKSAEDLASYDAESFIYKYHPVYGSPPVNTEKLKISGVKVSADGLKARIIVQNLR
QYYIHTLTLDGLRSQDGFYSLVHPVAYYTLNQIPDGNKLSASEVSTKNSAAPVNVPAKKT
AAPKATGKTPEAKGTTTPAKPAATAKAPTFKEVEGLLTKNTCLACHNQTKRQIGPPFVEI
AKRKYSAEKIFQLIHNPQPQNWPGYSTEMPPMPQVTKAEALKIAGWINSLNK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory