Comparing CA265_RS16400 FitnessBrowser__Pedo557:CA265_RS16400 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
P36683 Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli (strain K12) (see 2 papers)
31% identity, 99% coverage: 3:912/921 of query aligns to 1:836/865 of P36683
1l5jA Crystal structure of e. Coli aconitase b. (see paper)
32% identity, 99% coverage: 3:912/921 of query aligns to 1:836/862 of 1l5jA
4kp1A Crystal structure of ipm isomerase large subunit from methanococcus jannaschii (mj0499) (see paper)
24% identity, 54% coverage: 404:896/921 of query aligns to 1:417/423 of 4kp1A
4nqyA The reduced form of mj0499 (see paper)
24% identity, 44% coverage: 489:896/921 of query aligns to 68:404/409 of 4nqyA
Sites not aligning to the query:
>CA265_RS16400 FitnessBrowser__Pedo557:CA265_RS16400
MSIYNDYIQEIEDRKAQGLHPKPIDGAELLSEIITQIKNVNNINREEAVNFFIYNTLPGT
TAAAAVKAQFLKEIILAEVIVAEITPDFAFELLSHMKGGPSIKVLLDIALADNGDKAKKA
ADVLKTQVYLYDADTDRLKDAYNNGNEIAKEILESYAKAEFFTKLPEVAEEIKVVTFIAG
IGDISTDLLSPGNQAHSRSDRELHGKCMITPEAQEEIKALQAQHPDKSVMLVAEKGTMGV
GSSRMSGVNNVALWTGKRSSPYVPFVNIAPIVGGTNGISPIFLTTVDVTGGIGIDLQNWV
KKTDENGNVIRNEKDEPILEQRFSVETGTVLTINTKTKKLYNGEQELIDISKALTPQKME
FMKAGGSYAIIFGKKIQTFAAKTLGIEASSVFAPAKEVSYEGQGLTAVEKIFNRNAVGLT
QGKVLHAGSDVRVEVNIVGSQDTTGLMTAQELEAMAATVISPIVDGAYQSGCHTASVWDK
KAQANIPKLMKFMNDFGVITARDPKGEYHSMTDVIHKVLNDITIDEWAIIIGGDSHTRMS
KGVAFGADSGTVALALATGEASMPIPESVKVTFKGLMKEHMDFRDVVHATQLQMLQQFDG
ENVFQGRIIEVHIGTLLADQAFTFTDWTAEMKAKASICISQDDTLIQSLEIAKNRIQIMI
DKGMDNHNQVLQGLINKANKRIEEIKTGIKPALMPDDNAKYYAEVVIDLDLIEEPMIADP
DVNNADVSKRYTHDTIRDLTFYGGDKKVDLGFVGSCMVHKDDLKIVSQMLKNVETQTGKV
EFKAPLVVAAPTYNIIDELKAEGDWEYLQKYSGFEFSDALPKSAARTEYENIMYLERPGC
NLCMGNQEKAAKGDTVMATSTRLFQGRVVEDKDGKKGESLLASTPVVVLSAILGRIPSIE
EYKVAVEGINLTKFTPISTKQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory