SitesBLAST
Comparing CA265_RS20010 FitnessBrowser__Pedo557:CA265_RS20010 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
I3VE74 2-hydroxyisobutanoyl-CoA mutase small subunit; 2-hydroxyisobutyryl-CoA mutase small subunit; HCM small subunit; EC 5.4.99.64 from Aquincola tertiaricarbonis (see paper)
53% identity, 91% coverage: 8:134/139 of query aligns to 5:131/136 of I3VE74
- H18 (= H21) binding axial binding residue
4r3uC Crystal structure of 2-hydroxyisobutyryl-coa mutase (see paper)
53% identity, 91% coverage: 8:134/139 of query aligns to 3:129/131 of 4r3uC
- active site: K10 (= K15), D14 (= D19), H16 (= H21)
- binding cobalamin: G15 (= G20), H16 (= H21), D17 (= D22), R18 (= R23), G19 (= G24), V23 (≠ I28), G59 (= G64), S61 (= S66), L63 (= L68), I89 (≠ T94), A90 (≠ G95), G91 (= G96), G92 (= G97), L111 (≠ F116), L112 (≠ P117), Q113 (≠ P118), T115 (= T120)
P22033 Methylmalonyl-CoA mutase, mitochondrial; MCM; Methylmalonyl-CoA isomerase; EC 5.4.99.2 from Homo sapiens (Human) (see 28 papers)
46% identity, 86% coverage: 1:120/139 of query aligns to 608:726/750 of P22033
- P615 (= P8) to L: in MMAM; mut0; affects proper folding; reduced strongly protein level; to R: in MMAM; mut0; dbSNP:rs1554158777; to T: in MMAM; mut0; affects proper folding; reduced strongly protein level; loss of methylmalonyl-CoA mutase activity; dbSNP:rs1302409621
- R616 (= R10) to C: in MMAM; mut0; dbSNP:rs765284825
- L617 (≠ V11) to R: in MMAM; mut0; dbSNP:rs1554158775
- K621 (= K15) to N: in MMAM; mut0
- G623 (= G17) to R: in MMAM; mut0; dbSNP:rs121918254
- Q624 (≠ L18) to R: in MMAM; no effect on protein abundance; dbSNP:rs768521956
- D625 (= D19) to G: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs879253847; to V: in MMAM; mut0; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity
- G626 (= G20) to C: in MMAM; mut-; dbSNP:rs982110849
- H627 (= H21) binding axial binding residue; to R: in MMAM; mut0; dbSNP:rs372486357
- G630 (= G24) to E: in MMAM; mut0; dbSNP:rs143023066
- V633 (= V27) to G: in MMAM; mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; does not alter thermodynamic stability; dbSNP:rs200055428
- G637 (≠ S31) to E: in MMAM; mut-; to R: in MMAM; mut0; dbSNP:rs781501004
- F638 (≠ L32) to I: in MMAM; mut0
- D640 (= D34) to Y: in MMAM; mut0; dbSNP:rs865815395
- G642 (= G36) to R: in MMAM; mut-; dbSNP:rs747897332
- G648 (≠ T42) to D: in MMAM; mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; strong decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs766721811
- V669 (≠ I63) to E: in MMAM; mut0; dbSNP:rs1360470463
- I671 (= I65) to V: in dbSNP:rs8589
- L674 (= L68) to F: in MMAM; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs1164271240
- H678 (= H72) to R: in MMAM; mut-; dbSNP:rs147094927
- E684 (≠ K78) natural variant: E -> EL (in MMAM; mut-)
- L685 (≠ I79) to R: in MMAM; mut-; dbSNP:rs864309739
- R694 (≠ L88) to L: in MMAM; mut-; decreased protein abundance; loss of methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; to W: in MMAM; mut- and mut0; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs777758903
- M700 (≠ T94) to K: in MMAM; mut-; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs140600746
- G703 (= G97) to R: in MMAM; mut0; dbSNP:rs121918255
- G717 (= G111) to V: in MMAM; mut-; no effect on protein abundance; interferes with the binding of the cofactor to the apoenzyme; decreased methylmalonyl-CoA mutase activity; strong decreased affinity for adenosylcob(III)alamin; decreased thermodynamic stability; dbSNP:rs121918252
- G723 (≠ P117) to D: in MMAM; decreased protein expression; decreased methylmalonyl-CoA mutase activity; dbSNP:rs755077681
Sites not aligning to the query:
- 1:32 modified: transit peptide, Mitochondrion
- 7:750 natural variant: Missing (in MMAM; mut-)
- 50 binding
- 69 I → V: in MMAM; likely benign; dbSNP:rs115923556
- 86 P → L: in MMAM; mut0 and mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs769348060
- 87 G → E: in MMAM; mut0; dbSNP:rs1554160986
- 93 R → H: in MMAM; mut0; decreased methylmalonyl-CoA mutase activity; dbSNP:rs121918251
- 94 G → R: in MMAM; mut0; dbSNP:rs727504022; G → V: in MMAM; mut- and mut0; dbSNP:rs535411418
- 95 P → R: in MMAM; mut0; dbSNP:rs190834116
- 96:99 binding
- 100 Y → C: in MMAM; mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs864309735
- 105 W → R: in MMAM; mut0; dbSNP:rs121918249
- 106:110 binding
- 108 R → C: in MMAM; mut0; dbSNP:rs121918257; R → G: in MMAM; mut-; R → H: in MMAM; mut0; dbSNP:rs483352778
- 109 Q → R: in MMAM; mut0; dbSNP:rs1461110052
- 133 G → R: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs879253828
- 137 A → V: in MMAM; mut0; dbSNP:rs941483851
- 139 D → N: in MMAM; uncertain significance; dbSNP:rs879253829
- 140 L → P: in MMAM; decreased protein expression; decreased methylmalonyl-CoA mutase activity
- 141 A → T: in MMAM; decreased protein expression; dbSNP:rs1554160730
- 143 H → Y: in MMAM; mut0
- 145 G → S: in MMAM; mut0
- 148 S → L: in MMAM; mut0; dbSNP:rs1300547552
- 152:750 natural variant: Missing (in MMAM; mut0)
- 156 D → N: in MMAM; mut-
- 158 G → V: in MMAM; mut0
- 161 G → R: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; G → V: in MMAM; decreased protein expression
- 174 F → S: in MMAM; mut0; dbSNP:rs864309733
- 186 M → V: in MMAM; mut-; dbSNP:rs148331800
- 187 T → S: in MMAM; mut0; dbSNP:rs879253830
- 189 N → I: in MMAM; mut-; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs200908035; N → K: in MMAM; mut-; dbSNP:rs1561959114
- 191 A → E: in MMAM; mut- and mut0; affects proper folding; reduced protein level; decreased methylmalonyl-CoA mutase activity; dbSNP:rs760782399
- 197 A → E: in MMAM; mut0
- 203 G → R: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs778702777
- 205 natural variant: Missing (in MMAM; mut0; dbSNP:rs879253831)
- 215 G → C: in MMAM; mut- and mut0; dbSNP:rs121918258; G → S: in MMAM; mut0; dbSNP:rs121918258
- 216:218 binding
- 218 Q → H: in MMAM; mut0 and mut-; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; alters thermodynamic stability; dbSNP:rs1446389693
- 219 N → Y: in MMAM; mut0; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; dbSNP:rs121918256
- 228 binding ; R → Q: in MMAM; mut0; dbSNP:rs770810987
- 228:750 natural variant: Missing (in MMAM; mut0)
- 230 T → I: in MMAM; mut-; T → R: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs879253833
- 231 Y → N: in MMAM; mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; strong decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs864309736
- 255 binding
- 262 S → N: in MMAM; mut0
- 265 binding ; H → Y: in MMAM; mut-
- 276 E → D: in MMAM; uncertain significance; mut-; dbSNP:rs12175488
- 281 L → S: in MMAM; mut0; dbSNP:rs796052007
- 284 G → E: in MMAM; mut0; dbSNP:rs879253835; G → R: in MMAM; mut0; dbSNP:rs761477436
- 288 S → P: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs1179778233
- 291 G → E: in MMAM; mut0
- 293 Q → P: in MMAM; mut0
- 304:306 binding
- 305 L → S: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs1554160246
- 306 S → F: in MMAM; mut0; dbSNP:rs1085307929
- 309 W → G: in MMAM; decreased protein expression
- 312 G → V: in MMAM; mut0; dbSNP:rs864309734
- 316 Y → C: in MMAM; mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; no decreased affinity for adenosylcob(III)alamin; dbSNP:rs781474200
- 324 A → T: in MMAM; mut-; dbSNP:rs780387525
- 326 R → K: in MMAM; uncertain significance; dbSNP:rs758577372
- 328 L → F: in MMAM; mut0; affects proper folding; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; dbSNP:rs796052002; L → P: in MMAM; mut0; dbSNP:rs965316043
- 344 S → F: in MMAM; mut-; affects proper folding; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin
- 346 natural variant: Missing (in MMAM; mut0)
- 347 L → R: in MMAM; mut0; dbSNP:rs1026703654
- 350 H → Y: in MMAM; mut0; dbSNP:rs1407914109
- 358 L → P: in MMAM; mut0
- 366 N → S: in MMAM; mut-; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs864309737
- 369 R → C: in MMAM; mut0; dbSNP:rs772552898; R → H: in MMAM; mut- and mut0; no effect on protein abundance; loss of methylmalonyl-CoA mutase activity; alters thermodynamic stability; dbSNP:rs564069299
- 370 T → P: in MMAM; mut0; dbSNP:rs368790885
- 377 A → E: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs121918250
- 383 Q → H: in MMAM; mut0; Q → P: in MMAM; mut0
- 386 H → N: in MMAM; mut0; dbSNP:rs1554159937; H → R: in MMAM; mut0; dbSNP:rs866933356
- 387 T → I: in MMAM; mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability
- 388 N → H: in MMAM; mut0; dbSNP:rs766010704; N → K: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs879253840
- 389 natural variant: Missing (in MMAM; mut0)
- 412 natural variant: Missing (in MMAM; mut0)
- 424 P → L: in MMAM; mut0; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs879253842
- 426 G → E: in MMAM; mut-; decreased protein abundance; decreased methylmalonyl-CoA mutase activity; dbSNP:rs533755473; G → R: in MMAM; mut-; no effect on protein abundance; decreased methylmalonyl-CoA mutase activity; strong decreased affinity for adenosylcob(III)alamin; alters thermodynamic stability; dbSNP:rs769922244
- 427 G → D: in MMAM; mut0; dbSNP:rs753288303
- 454 G → E: in MMAM; mut0
- 499 A → T: in dbSNP:rs2229385
- 505 I → T: in MMAM; decreased protein expression; decreased methylmalonyl-CoA mutase activity
- 514 Q → E: in MMAM; uncertain significance; Q → K: in MMAM; decreased protein expression
- 518 L → P: in MMAM; mut0; dbSNP:rs864309738
- 532 R → H: in dbSNP:rs1141321
- 535 A → P: in MMAM; mut0; dbSNP:rs760183775
- 552 A → V: in MMAM; uncertain significance; dbSNP:rs879253845
- 560 C → Y: in MMAM; mut0; dbSNP:rs1238333040
- 566 T → R: in MMAM; mut0
- 573 F → S: in MMAM; mut-; affects proper folding; no effect on protein abundance; no effect on methylmalonyl-CoA mutase activity; decreased affinity for adenosylcob(III)alamin; does not alter thermodynamic stability; dbSNP:rs775593146
- 587 Y → C: in MMAM; mut-
- 597 I → R: in MMAM; no changed in protein expression; decreased methylmalonyl-CoA mutase activity; dbSNP:rs1554158951
2xiqA Crystal structure of human methylmalonyl-coa mutase in complex with adenosylcobalamin and malonyl-coa (see paper)
45% identity, 86% coverage: 1:120/139 of query aligns to 573:691/714 of 2xiqA
- active site: K586 (= K15), D590 (= D19), H592 (= H21)
- binding cobalamin: G591 (= G20), H592 (= H21), D593 (= D22), R594 (= R23), G595 (= G24), I599 (= I28), G635 (= G64), S637 (= S66), L639 (= L68), A641 (≠ G70), G667 (= G96), G668 (= G97), F687 (= F116), G688 (≠ P117), T691 (= T120)
Sites not aligning to the query:
- active site: 75, 229, 230
- binding cobalamin: 75, 105, 108, 125, 193, 233, 320, 321, 357, 360, 361
- binding malonyl-coenzyme a: 61, 63, 64, 68, 71, 73, 75, 150, 152, 181, 193, 220, 230, 269, 271, 273, 313, 314, 315, 317, 348
8dyjB Crystal structure of human methylmalonyl-coa mutase in complex with adp and cob(ii)alamin (see paper)
45% identity, 86% coverage: 1:120/139 of query aligns to 572:690/708 of 8dyjB
- binding cobalamin: G590 (= G20), H591 (= H21), D592 (= D22), R593 (= R23), G594 (= G24), I598 (= I28), S636 (= S66), L638 (= L68), A640 (≠ G70), G666 (= G96), G667 (= G97), V668 (≠ I98), F686 (= F116), G687 (≠ P117), T690 (= T120)
Sites not aligning to the query:
- binding adenosine-5'-diphosphate: 74, 151, 192, 228, 229, 272, 316, 352, 356, 360, 361
- binding cobalamin: 102, 104, 107, 124, 191, 192, 229, 232, 319, 320, 356, 359, 360
6reqA Methylmalonyl-coa mutase, 3-carboxypropyl-coa inhibitor complex (see paper)
44% identity, 83% coverage: 7:122/139 of query aligns to 596:710/727 of 6reqA
- active site: K603 (= K15), D607 (= D19), H609 (= H21)
- binding cobalamin: G608 (= G20), H609 (= H21), D610 (= D22), R611 (= R23), G612 (= G24), I616 (= I28), Y620 (≠ L32), S654 (= S66), L656 (= L68), G658 (= G70), G684 (= G96), G685 (= G97), Y704 (≠ F116), T705 (≠ P117), T708 (= T120)
Sites not aligning to the query:
- active site: 88, 242, 243
- binding 3-carboxypropyl-coenzyme a: 74, 76, 77, 80, 81, 84, 86, 88, 113, 163, 165, 194, 206, 243, 282, 284, 286, 327, 329, 360
- binding cobalamin: 88, 116, 118, 121, 138, 206, 246, 332, 333, 369, 370, 372
1e1cA Methylmalonyl-coa mutase h244a mutant (see paper)
44% identity, 83% coverage: 7:122/139 of query aligns to 596:710/727 of 1e1cA
- active site: K603 (= K15), D607 (= D19), H609 (= H21)
- binding cobalamin: G608 (= G20), H609 (= H21), D610 (= D22), R611 (= R23), G612 (= G24), I616 (= I28), Y620 (≠ L32), S654 (= S66), L656 (= L68), G684 (= G96), G685 (= G97), V686 (≠ I98), Y704 (≠ F116), T705 (≠ P117), T708 (= T120)
Sites not aligning to the query:
- active site: 88, 242, 243
- binding cobalamin: 88, 118, 121, 138, 205, 206, 246, 332, 333, 369, 370, 372, 373, 713
- binding desulfo-coenzyme a: 74, 77, 80, 81, 84, 86, 113, 163, 165, 194, 282, 284, 327, 360
7reqA Methylmalonyl-coa mutase, 2-carboxypropyl-coa inhibitor complex (see paper)
44% identity, 83% coverage: 7:122/139 of query aligns to 594:708/725 of 7reqA
- active site: K601 (= K15), D605 (= D19), H607 (= H21)
- binding cobalamin: G606 (= G20), H607 (= H21), D608 (= D22), R609 (= R23), G610 (= G24), I614 (= I28), S652 (= S66), L654 (= L68), G682 (= G96), G683 (= G97), Y702 (≠ F116), T703 (≠ P117), T706 (= T120)
Sites not aligning to the query:
- active site: 86, 240, 241
- binding 2-carboxypropyl-coenzyme a: 72, 74, 75, 78, 79, 82, 84, 86, 161, 163, 192, 204, 241, 280, 282, 284, 325, 358
- binding cobalamin: 86, 116, 136, 204, 244, 330, 331, 367, 368, 370
3reqA Methylmalonyl-coa mutase, substrate-free state (poor quality structure) (see paper)
44% identity, 83% coverage: 7:122/139 of query aligns to 594:708/725 of 3reqA
- active site: K601 (= K15), D605 (= D19), H607 (= H21)
- binding cobalamin: G606 (= G20), H607 (= H21), D608 (= D22), R609 (= R23), G610 (= G24), I614 (= I28), G650 (= G64), S652 (= S66), L654 (= L68), G682 (= G96), G683 (= G97), Y702 (≠ F116), T703 (≠ P117), P704 (= P118), T706 (= T120)
Sites not aligning to the query:
- active site: 86, 240, 241
- binding adenosine: 86, 240, 244, 330
- binding cobalamin: 116, 203, 204, 244, 330, 331, 368
2reqA Methylmalonyl-coa mutase, non-productive coa complex, in open conformation representing substrate-free state (see paper)
44% identity, 83% coverage: 7:122/139 of query aligns to 594:708/725 of 2reqA
- active site: K601 (= K15), D605 (= D19), H607 (= H21)
- binding cobalamin: G606 (= G20), H607 (= H21), D608 (= D22), R609 (= R23), G610 (= G24), I614 (= I28), G650 (= G64), S652 (= S66), L654 (= L68), A655 (≠ S69), G682 (= G96), G683 (= G97), Y702 (≠ F116), T703 (≠ P117), T706 (= T120)
Sites not aligning to the query:
P11653 Methylmalonyl-CoA mutase large subunit; MCM-alpha; EC 5.4.99.2 from Propionibacterium freudenreichii subsp. shermanii (see 4 papers)
44% identity, 83% coverage: 7:122/139 of query aligns to 597:711/728 of P11653
- G609 (= G20) binding
- H610 (= H21) binding axial binding residue
- D611 (= D22) binding
- R612 (= R23) binding
- S655 (= S66) binding
- L657 (= L68) binding
- G686 (= G97) binding
- T709 (= T120) binding
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 75 binding
- 78 binding
- 82 binding
- 85 binding
- 87 binding
- 89 binding ; Y→F: Does not significantly affect affinity for succiny-CoA, but kcat is lowered about 580-fold.
- 114 binding
- 117 binding
- 139 binding
- 195 binding
- 197 binding
- 206 binding
- 207 binding ; binding
- 244 binding
- 283 binding
- 285 binding
- 333 binding
- 370 binding
- 373 binding
5reqA Methylmalonyl-coa mutase, y89f mutant, substrate complex (see paper)
44% identity, 83% coverage: 7:122/139 of query aligns to 594:708/725 of 5reqA
- active site: K601 (= K15), D605 (= D19), H607 (= H21)
- binding cobalamin: G606 (= G20), H607 (= H21), D608 (= D22), R609 (= R23), G610 (= G24), I614 (= I28), S652 (= S66), L654 (= L68), G682 (= G96), G683 (= G97), V684 (≠ I98), Y702 (≠ F116), T703 (≠ P117), T706 (= T120)
Sites not aligning to the query:
- active site: 86, 240, 241
- binding cobalamin: 116, 136, 204, 241, 244, 330, 331, 367, 368, 370
- binding methylmalonyl(carbadethia)-coenzyme a: 72, 74, 75, 79, 82, 84, 86, 111, 161, 163, 192, 194, 204, 233, 241, 280, 282, 284, 324, 325, 358, 359
- binding succinyl(carbadethia)-coenzyme a: 72, 74, 75, 79, 82, 84, 86, 161, 163, 192, 204, 233, 241, 280, 282, 284, 325, 358
4reqA Methylmalonyl-coa mutase substrate complex (see paper)
44% identity, 83% coverage: 7:122/139 of query aligns to 595:709/726 of 4reqA
- active site: K602 (= K15), D606 (= D19), H608 (= H21)
- binding cobalamin: G607 (= G20), H608 (= H21), D609 (= D22), R610 (= R23), G611 (= G24), I615 (= I28), S653 (= S66), L655 (= L68), G683 (= G96), G684 (= G97), V685 (≠ I98), Y703 (≠ F116), T704 (≠ P117), T707 (= T120)
Sites not aligning to the query:
- active site: 87, 241, 242
- binding cobalamin: 87, 117, 137, 204, 205, 242, 245, 331, 332, 368, 369, 371, 372
- binding methylmalonyl-coenzyme a: 73, 76, 79, 80, 83, 85, 87, 112, 162, 164, 193, 205, 234, 241, 242, 281, 283, 285, 326, 328, 359, 360
- binding succinyl-coenzyme a: 73, 76, 79, 80, 83, 85, 87, 162, 164, 193, 195, 205, 234, 241, 242, 281, 283, 285, 324, 326, 359
6oxdA Structure of mycobacterium tuberculosis methylmalonyl-coa mutase with adenosyl cobalamin (see paper)
43% identity, 84% coverage: 7:123/139 of query aligns to 603:718/736 of 6oxdA
- active site: K610 (= K15), D614 (= D19), H616 (= H21)
- binding cobalamin: G615 (= G20), H616 (= H21), D617 (= D22), R618 (= R23), S661 (= S66), L663 (= L68), A665 (≠ G70), G691 (= G96), G692 (= G97), F711 (= F116), P712 (= P117), T715 (= T120)
Sites not aligning to the query:
- active site: 100, 254, 255
- binding cobalamin: 100, 130, 133, 150, 218, 258, 344, 345, 381, 382, 384, 385
- binding Itaconyl coenzyme A: 86, 88, 89, 93, 96, 98, 100, 175, 177, 206, 218, 255, 294, 296, 298, 337, 338, 339, 341, 372
8gjuJ Crystal structure of human methylmalonyl-coa mutase (mmut) in complex with methylmalonic acidemia type a protein (mmaa), coenzyme a, and gdp (see paper)
42% identity, 86% coverage: 1:120/139 of query aligns to 555:668/689 of 8gjuJ
Sites not aligning to the query:
- binding coenzyme a: 61, 63, 68, 71, 73, 150, 152, 181, 183, 222, 269, 271, 313, 314, 315, 348
Q59268 2-methyleneglutarate mutase; Alpha-methyleneglutarate mutase; EC 5.4.99.4 from Eubacterium barkeri (Clostridium barkeri) (see paper)
30% identity, 99% coverage: 1:137/139 of query aligns to 465:613/614 of Q59268
- D483 (= D19) mutation to N: Activity reduced 2000-fold.
- H485 (= H21) mutation to Q: Loss of activity.
Sites not aligning to the query:
- 464 H→Q: No effect on activity.
Q5KUG0 Fused isobutyryl-CoA mutase; EC 5.4.99.13; EC 3.6.5.- from Geobacillus kaustophilus (strain HTA426) (see paper)
33% identity, 79% coverage: 9:118/139 of query aligns to 11:122/1086 of Q5KUG0
Sites not aligning to the query:
- 213 K→A: Loss of GTPase and ATPase activities. No effect on the mutase activity.
5cjvA Isobutyryl-coa mutase fused with bound adenosylcobalamin, gdp, mg (holo-icmf/gdp), and substrate isovaleryl-coenzyme a (see paper)
33% identity, 79% coverage: 9:118/139 of query aligns to 7:118/1061 of 5cjvA
- binding cobalamin: G18 (= G20), H19 (= H21), D20 (= D22), A21 (≠ R23), S22 (≠ G24), M26 (≠ I28), Y66 (≠ L68), Q67 (≠ S69), G94 (≠ L93), G96 (= G95), V98 (≠ G97), Y116 (≠ F116), S117 (≠ P117)
Sites not aligning to the query:
- active site: 6, 569, 750, 751
- binding cobalamin: 129, 598, 603, 621, 713, 754, 755, 839, 840, 876, 877, 879, 964
- binding guanosine-5'-diphosphate: 199, 201, 202, 203, 204, 245, 336, 338, 373, 375, 944
- binding Isovaleryl-coenzyme A: 556, 558, 560, 567, 569, 593, 648, 650, 699, 701, 703, 713, 743, 751, 792, 794, 832, 834
- binding magnesium ion: 203, 229, 242, 242, 288, 288
5cjwA Isobutyryl-coa mutase fused with bound adenosylcobalamin, gdp, mg (holo-icmf/gdp), and substrate pivalyl-coenzyme a (see paper)
33% identity, 79% coverage: 9:118/139 of query aligns to 7:118/1063 of 5cjwA
- binding cobalamin: G18 (= G20), H19 (= H21), D20 (= D22), A21 (≠ R23), S22 (≠ G24), M26 (≠ I28), Y66 (≠ L68), Q67 (≠ S69), G94 (≠ L93), G96 (= G95), V98 (≠ G97), Y116 (≠ F116), S117 (≠ P117), P118 (= P118)
Sites not aligning to the query:
- active site: 6, 571, 752, 753
- binding pivalyl-coenzyme A: 558, 560, 562, 569, 571, 595, 650, 652, 701, 703, 705, 745, 752, 753, 794, 796, 829, 834, 836
- binding cobalamin: 600, 605, 623, 715, 753, 756, 757, 841, 842, 878, 879, 881, 966
- binding guanosine-5'-diphosphate: 199, 201, 202, 203, 204, 245, 337, 338, 340, 375, 377, 1062
- binding magnesium ion: 203, 229, 242, 242, 290, 290
5cjtA Isobutyryl-coa mutase fused with bound adenosylcobalamin, gdp, mg (holo-icmf/gdp), and substrate isobutyryl-coenzyme a (see paper)
33% identity, 79% coverage: 9:118/139 of query aligns to 7:118/1062 of 5cjtA
- binding cobalamin: G18 (= G20), H19 (= H21), D20 (= D22), A21 (≠ R23), S22 (≠ G24), M26 (≠ I28), Y66 (≠ L68), Q67 (≠ S69), G94 (≠ L93), G96 (= G95), V98 (≠ G97), Y116 (≠ F116), S117 (≠ P117)
Sites not aligning to the query:
- active site: 6, 569, 750, 751
- binding cobalamin: 598, 603, 621, 713, 751, 754, 755, 839, 840, 876, 877, 879, 964
- binding isobutyryl-coenzyme a: 556, 558, 560, 567, 569, 593, 648, 650, 699, 701, 703, 743, 750, 751, 792, 794, 827, 832, 834
- binding guanosine-5'-diphosphate: 199, 201, 202, 203, 204, 245, 336, 337, 339, 374, 376, 944
- binding magnesium ion: 203, 229, 242, 242, 289, 289
Query Sequence
>CA265_RS20010 FitnessBrowser__Pedo557:CA265_RS20010
MSKVLNRPIRVLVAKVGLDGHDRGAKVIATSLRDAGMEVIYTGLRQTPEMVVNTALQEDV
DAIGISILSGAHMTVFPKIIHFMKEKQLDDVLLTGGGIIPEADRLKLAGMGVGELFPPGT
TMASIVEYIQNWVTENRNF
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory