Comparing CA265_RS24665 FitnessBrowser__Pedo557:CA265_RS24665 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 1 hits to proteins with known functional sites (download)
Q39232 Sucrose transport protein SUC1; AtSUC1; Sucrose permease 1; Sucrose-proton symporter 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
27% identity, 87% coverage: 7:403/458 of query aligns to 24:464/513 of Q39232
>CA265_RS24665 FitnessBrowser__Pedo557:CA265_RS24665
MSLKTIFENPKLTLVQIINMSVGFFGIQFGWDLQRANMGRIYENLGANPDQVPLLFLAAP
LTGLLVQPIIGYLSDRTWHPKWGRRRPYFMIGAIVSSIALIFMPHSSVLWMAAGLLWILD
VFGNIAMEPFRAFVTDKLPDSQVNRGFIMQSMMIGLGGSVASALPWIMNNVFHLTNTAEQ
GSIPENVKFSFYIGAFFFFAAVLWTVFTTKEYPPQDVDFKEKVKESNKGFGGGAREIFHA
LRNMPKRMQIVSLVQFFTWPGLFLMWFYYTTAVAVNVFGGKDAADPVYAQGADFGSLTLA
YYSVITFLFALVLPKIADALGRKTTHALCLICGAIGLISVAWVHDKNMLYLCMTGVGIAW
ASILSMPYAMLSGSLPKDKIGIYMGIFNFFIVLPEIIASLGFGWLMRNVLNNDRLLAVQL
GGGLMILAAVICYVFIREPKKTDEVLAAKLGVEENRSV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory