SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CA265_RS25410 FitnessBrowser__Pedo557:CA265_RS25410 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

1kofA Crystal structure of gluconate kinase (see paper)
45% identity, 94% coverage: 6:163/168 of query aligns to 10:167/171 of 1kofA

query
sites
1kofA
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V
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L
M
 
M
G
 
G
V
 
V
S
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S
G
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G
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S
G
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G
K
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K
T
x
S
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x
A
I
 
V
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S
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E
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A
P
 
H
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Q
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L
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A
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D
G
 
G
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D
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F
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R
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N
V
 
I
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E
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K
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M
A
 
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G
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E
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P
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L
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N
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D
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D
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K
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W
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Q
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A
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C
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S
A
 
A
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L
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K
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K
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H
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D
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L
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R
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E
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G
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I
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Y
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K
 
A
R
 
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M
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Q
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E
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E
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A
 
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E
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E

1ko8A Crystal structure of gluconate kinase (see paper)
45% identity, 94% coverage: 6:163/168 of query aligns to 10:167/172 of 1ko8A

query
sites
1ko8A
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
 
G
S
 
S
G
 
G
K
 
K
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S
V
 
A
I
 
V
G
 
A
K
 
S
A
 
E
L
 
V
A
 
A
P
 
H
K
 
Q
I
 
L
N
 
H
A
 
A
E
 
A
F
 
F
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L
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D
G
 
G
D
 
D
N
 
F
L
 
L
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H
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P
Q
 
R
R
 
R
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N
V
 
I
D
 
E
K
 
K
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M
A
 
A
A
 
S
G
 
G
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E
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P
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N
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D
A
 
D
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W
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Q
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L
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I
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C
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A
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H
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E

1ko5A Crystal structure of gluconate kinase (see paper)
45% identity, 94% coverage: 6:163/168 of query aligns to 10:167/172 of 1ko5A

query
sites
1ko5A
I
 
V
L
 
L
M
 
M
G
 
G
V
 
V
S
|
S
G
|
G
S
 
S
G
|
G
K
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K
T
x
S
V
 
A
I
 
V
G
 
A
K
 
S
A
 
E
L
 
V
A
 
A
P
 
H
K
 
Q
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L
N
 
H
A
 
A
E
 
A
F
 
F
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L
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D
G
 
G
D
 
D
N
 
F
L
 
L
H
 
H
S
 
P
Q
 
R
R
 
R
N
 
N
V
 
I
D
 
E
K
 
K
M
 
M
A
 
A
A
 
S
G
 
G
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E
P
 
P
L
 
L
T
 
N
D
 
D
A
 
D
D
 
D
R
 
R
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D
 
P
W
 
W
L
 
L
Q
 
Q
L
 
A
I
 
L
A
 
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K
 
D
V
 
A
G
 
A
R
 
F
E
 
A
H
 
M
V
 
Q
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S
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L
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I
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C
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A
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H
Y
 
Y
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D
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G
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N
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E

Query Sequence

>CA265_RS25410 FitnessBrowser__Pedo557:CA265_RS25410
MAGFIILMGVSGSGKTVIGKALAPKINAEFIDGDNLHSQRNVDKMAAGIPLTDADRLDWL
QLIAKVGREHVAHGTSCIIACSALKKSYRNLLRNDNPSIRFVYLQGSFGLIHDRIAKRSH
QYMPASLLKSQFETLEEPLADEGDVVTVLIDQSIPEIVNEIVKADLIS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory