Comparing CCNA_00025 FitnessBrowser__Caulo:CCNA_00025 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
Q9Y7Q9 Probable metabolite transporter C2H8.02 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
27% identity, 38% coverage: 20:229/550 of query aligns to 45:264/583 of Q9Y7Q9
Sites not aligning to the query:
Q8NLB7 Gentisate transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) (see paper)
23% identity, 52% coverage: 24:309/550 of query aligns to 53:315/444 of Q8NLB7
Sites not aligning to the query:
O42885 Putative inorganic phosphate transporter C8E4.01c from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
27% identity, 39% coverage: 20:231/550 of query aligns to 51:277/572 of O42885
Sites not aligning to the query:
P36035 Carboxylic acid transporter protein homolog from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
25% identity, 28% coverage: 67:219/550 of query aligns to 188:322/616 of P36035
Sites not aligning to the query:
>CCNA_00025 FitnessBrowser__Caulo:CCNA_00025
MAEEGQKRASMRTVVSASSAGTAFEWYDFFIFGSLTQVISKTFFAGLNETAGYIAALALF
GVGFAFRPLGALVFGKIGDQDGRKGAFLATVLLMGGATFAIAFLPTYEQAGIIAPILLII
LRCLQGFALGGEYGGAAIYVAEHSPANKRGWATSWVQTSAAFGLFGALLVILATRWVLGK
YVGPDAFDEWGWRIPFAVSLGLLGISVWMRLKLTESPTFEAMKAEGQASKAPYAEAFGQW
SNLKLVILAFVSMMCAQGAVWYTSFFYVQTFMEKFLKVDPVTINELMMIATAVSAIFYVV
FGWLSDKVGRKPVMLGGMTLALLFYFPGFHLLEKAANPALAEASAKAPVVVFADPKDCSL
QFDPVGKTAFVTSCDIVKSTLANAGVSYANEAAPAGAVAVMRIGGAEVLSKSAAGLGKDE
VKATKAEVEGRIKAALAGAGYPTKADPARMNMPMILGVLFVFVIAATALFGPLAACLVEL
FPTRVRYTALSLPYHIGTGWVGGFVPFFAFAIVAAVGNIYAGLWYPFAFTLLSVLTTLFL
LPETKERPLN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory