SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CCNA_00086 FitnessBrowser__Caulo:CCNA_00086 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
25% identity, 29% coverage: 745:1203/1607 of query aligns to 499:928/1042 of Q54VI3

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Query Sequence

>CCNA_00086 FitnessBrowser__Caulo:CCNA_00086
MSGVKIDPSNSLTAAYALTRGKTVQELALEERDFLAQVGADWAIEDAPVLSAKAAAASLA
EFFDFARTLKGDQPTVRLRSAGEAGAARDLLEIVQPDRPFLVDSVMGEITESGFRVRAMF
HPVVEIDGIARSFIQVHLDPVGEDRVESLLEQIRETLFDVRRAVGDFKAMRDLMHRAVAE
LAATPGVTSEEGRQEDLAFLRWLEDDNFVFLGARVYEYPRSSDGGYAAEEPLYEAEASLG
VLRDSSRSVLRRAYEPAILSKQLQRQLETGAPVVVAKSNLRSRVHRRGFMDYVGVRRYGD
DGKPSGEVRFVGLFTAEAYETPAVEVPLIRHRVARIMRRAAKAPGSHNEKRLRNILETWP
RDELFQTSEDTLLSMALGVLHLIDRPRVRLFARLDPFDRFASVLVYIPRERFDTEVCARA
GAILADAYDGKVLEYYPEISDAPLARAHFIIEVTPGDHPDPDLSQVEARIADTALTWEDR
FEAVVRAGGAPTGGVRTLLDKYGYAFPPGYRDQYDALEALADIDIIETLTEGALPRVRAF
RRFEDGPRTFRFKLYLRGAAAPLAEVLPILERMGLKALIEDGFRLSIHEKDGPHSVWVHE
FVLDDPAGEHIVFDEVRQVFEEAFIAIWTGATENDGFNRIVLEMAVGWREAALLRALARY
RQQSGLDPSQQVQEAALRDHPMVARLILDLFRVKFDPAIRADLRTRREQAEAVQFSIVEA
LQAVESLDADRVLRRLAALVGAIQRTNFYQLGADGEPKSYISFKIASRELEDLPAPKPYR
EIYVSAPHVEGVHLRFGPVARGGLRWSDRRDDFRTEVLGLVKAQQVKNAVIVPVGSKGGF
YPKQLPRGGDRDAIQAEAIRAYKTFLSGLLDLTDNIDSDNQVVPPPSVIAHDAQDPYLVV
AADKGTATFSDIANGVAESYGFWLGDAFASGGSVGYDHKVMGITARGAWEAVKRHFRELG
KDIQTEAFTVVGVGDMSGDVFGNGMLLSKQTKLLAAFDHRHIFLDPNPDPAVSWAERDRM
FKLPRSSWEDYDKSKISAGGGVFARSLKSIPLSAEVRAMLEIKAEAVSPAELMTAILKSK
AELLYLGGIGTYVKAKGETNADAGDKANDAIRINGSDLRVKVVGEGANLGLTQAGRIEFA
QAGGHINTDAIDNSAGVDSSDHEVNIKILTGILERGGQLDRESRNTLLASMTDDVAHHVL
EHNYDQTLALTLLESDAVSEVDAQIRYMVNLEQRGRLDRRVEGLPTNTTLLERKAAGRGL
TRPELAVLLAYGKLDLFDEIVASQSPDDPWFERTLRGYFPRALDQYADAMQKHRLKREII
ATVVGNQMVNMCGPTFVSRLKAAAGADVNAVVVGFTAAREILGIDGLWDQVNGLDNKASA
EGQTALYKALAYALRSLTFWLARRAQRDAANVQTLVEAYGPSVAALKALAPAILSPFEQK
AVSKRVKAYVADGAPEALALSVAALQPLTTAADLVDLANASSWSVENVARLYHQVGAAFG
FDRLRGAAGSFVGGDAFERLAVRRLIEDMLTEQTSITQQVLKFAANAQAGEDEAAAKAAI
SSWAALRGDRPRAVKRTIEDIEQAGGGWTFAKLTIANAALRELSSAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory