SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CCNA_00245 FitnessBrowser__Caulo:CCNA_00245 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

1f93A Crystal structure of a complex between the dimerization domain of hnf-1 alpha and the coactivator dcoh (see paper)
55% identity, 91% coverage: 9:94/94 of query aligns to 21:99/103 of 1f93A

query
sites
1f93A
A
 
A
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A

P61459 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Rattus norvegicus (Rat) (see 2 papers)
55% identity, 91% coverage: 9:94/94 of query aligns to 22:100/104 of P61459

query
sites
P61459
A
 
A
A
 
V
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D
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F
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V
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A

Sites not aligning to the query:

P61457 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Homo sapiens (Human) (see 6 papers)
55% identity, 91% coverage: 9:94/94 of query aligns to 22:100/104 of P61457

query
sites
P61457
A
 
A
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Sites not aligning to the query:

1dcpA Dcoh, a bifunctional protein-binding transcriptional coactivator, complexed with biopterin (see paper)
55% identity, 91% coverage: 9:94/94 of query aligns to 17:95/99 of 1dcpA

query
sites
1dcpA
A
 
A
A
 
V
A
 
G
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N
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E
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A

2v6tB Crystal structure of a complex of pterin-4a-carbinolamine dehydratase from toxoplasma gondii with 7,8-dihydrobiopterin (see paper)
60% identity, 82% coverage: 18:94/94 of query aligns to 21:96/100 of 2v6tB

query
sites
2v6tB
W
 
W
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A
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L
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A
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K
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F
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M
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D
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D
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A
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A

Query Sequence

>CCNA_00245 FitnessBrowser__Caulo:CCNA_00245
MSRPRIGAAAAITQLEGWAIAPNHKDAIVKTFRFDDFNQAFGFMTRVALMADKLDHHPEW
FNVYNRVEVLLTTHDADGVTDLDLTLAKFMDSAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory