Comparing CCNA_00283 FitnessBrowser__Caulo:CCNA_00283 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
3tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2-amino- 6-oxopimelate and coenzyme a (see paper)
67% identity, 96% coverage: 11:285/286 of query aligns to 1:271/274 of 3tdtA
2tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2- aminopimelate and coenzyme a (see paper)
67% identity, 96% coverage: 11:285/286 of query aligns to 1:271/274 of 2tdtA
1kgtA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with pimelate and succinyl-coa (see paper)
67% identity, 96% coverage: 11:285/286 of query aligns to 1:271/274 of 1kgtA
1kgqA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with l-2-aminopimelate and succinamide-coa (see paper)
67% identity, 96% coverage: 11:285/286 of query aligns to 1:271/274 of 1kgqA
3r8yA Structure of the bacillus anthracis tetrahydropicolinate succinyltransferase
43% identity, 35% coverage: 110:209/286 of query aligns to 67:169/203 of 3r8yA
3r5bA Pseudomonas aeruginosa dapd (pa3666) in complex with l-2-aminopimelate (see paper)
30% identity, 46% coverage: 98:228/286 of query aligns to 166:284/321 of 3r5bA
Sites not aligning to the query:
3r5aA Pseudomonas aeruginosa dapd (pa3666) in complex with d-2-aminopimelate (see paper)
30% identity, 46% coverage: 98:228/286 of query aligns to 166:284/321 of 3r5aA
Sites not aligning to the query:
>CCNA_00283 FitnessBrowser__Caulo:CCNA_00283
MTAVSLPPVSLADLQTEIEAAWEARADISAATTGPVRTAVDEALRLLDSGEARVAEKIDG
EWFTHQWLKKAVLLSFRLNPNTVMRSGALGGGVGPWWDKVPNKFDGWDAPQFEAGGFRAV
PGAIVRRGAHIGKNVILMPSFVNIGGYVDEGTMVDTWVTVGSCAQIGKNVHLSGGVGIGG
VLEPLQANPTIIEDNCFIGARSEVVEGVVVGEGSVLSMGVFISASTKIVDRKTGAVHIGK
VPPYSVVVPGNLPDPNGGPGLYCAVIVKTVDAQTRSKTSINDLLRD
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory