Comparing CCNA_00572 FitnessBrowser__Caulo:CCNA_00572 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 5 hits to proteins with known functional sites (download)
P09323 PTS system N-acetylglucosamine-specific EIICBA component; EIICBA-Nag; EII-Nag; EC 2.7.1.193 from Escherichia coli (strain K12) (see paper)
45% identity, 85% coverage: 5:497/582 of query aligns to 4:470/648 of P09323
Sites not aligning to the query:
P69786 PTS system glucose-specific EIICB component; EIICB-Glc; EII-Glc; EC 2.7.1.199 from Escherichia coli (strain K12) (see 5 papers)
40% identity, 84% coverage: 8:493/582 of query aligns to 9:474/477 of P69786
8qsrA Cryo-em structure of the glucose-specific pts transporter iicb from e. Coli in the inward-facing conformation
40% identity, 68% coverage: 8:402/582 of query aligns to 6:383/383 of 8qsrA
6bvgA Crystal structure of bcmalt t280c-e54c crosslinked by divalent mercury (see paper)
31% identity, 68% coverage: 5:402/582 of query aligns to 2:442/447 of 6bvgA
1o2fB Complex of enzyme iiaglc and iibglc phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
39% identity, 13% coverage: 420:493/582 of query aligns to 3:75/77 of 1o2fB
>CCNA_00572 FitnessBrowser__Caulo:CCNA_00572
MRSPLEILQPLGRALMLPIAVLPVAALLLRIGQPDLLGAPALAAATHGMSLSVANTFGAA
GGAIFASLGLIFAIGVAVGLARENHGAAGLAGVVCYVIATKGVEALLVAPPEVAAKAVEG
AKDLAIAAWKAKEIGKLSIPVGILSGVISGALYNRYSTIQLPEYLAFFGGRRFVPIVAGL
AGVVLALLFGAFWSTLEAGVDGLSGLVTASGDLGLVVYGLLNRLLIVTGLHHILNNVVWF
ILGDFNGVTGDLNRFAAGDKTAGAFMSGFFPVMMFGLPAACLAMLHTARPERRKAVAGML
GSLALTSFLTGVTEPIEFTFMFLAPVLFAIHALLTGLSMALMNMLDVKLGFGFSAGLFDY
VLNFNKATRPLLLIPVGLVYGALYYGVFRFAILRFDLKTPGREDEAPPSAQAVTTGGGRG
ADMLAALGGAANLVSVDACTTRLRLIVVDQGLVNEPALKALGARGVVRPSDKALQVVLGP
IADTVAGEIRHAISAPPAPAPAPAPDVSQAAKALLAALGGADNLRDLSVHASRLRVVLND
PERVDQAALHTAGVRGFAAVAPGAVHIIIGPHAERIAEVLRP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory