SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CCNA_01358 FitnessBrowser__Caulo:CCNA_01358 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8bvkA The crystal structure of o-glycoside cleaving beta-eliminase from a. Tumefaciens atoge (see paper)
38% identity, 29% coverage: 125:211/299 of query aligns to 104:192/225 of 8bvkA

query
sites
8bvkA
D
 
D
A
 
A
E
 
A
G
 
G
W
 
W
T
 
T
L
 
A
F
 
F
G
 
G
A
 
K
R
 
E
L
 
L
T
 
G
K
 
G
V
 
Y
A
 
A
D
 
D
Y
 
K
I
 
L
A
 
S
A
 
A
Q
 
A
G
 
G
L
 
L
K
 
S
F
 
M
A
 
A
Y
 
Y
H
|
H
H
 
N
H
 
H
L
 
D
G
 
F
T
 
E
V
 
M
V
 
V
E
 
K
R
 
F
-
 
D
-
 
G
P
 
K
Q
 
T
D
 
A
L
 
L
E
|
E
A
 
L
F
 
L
L
 
L
G
x
D
A
 
A
T
 
A
G
 
G
P
 
P
S
 
K
V
 
L
G
 
Q
L
 
S
T
x
E
V
 
L
D
 
D
T
 
V
G
 
A
H
 
W
A
 
V
A
 
A
L
 
R
G
 
S
G
 
G
V
 
N
D
 
D
P
 
P
V
 
A
A
 
E
L
 
F
I
 
L
R
 
G
A
 
T
H
 
L
P
 
N
E
 
G
R
 
R
V
 
V
A
 
F
H
 
A
V
 
I
H
 
H
C
 
A
K
 
K
D
 
D

Sites not aligning to the query:

Query Sequence

>CCNA_01358 FitnessBrowser__Caulo:CCNA_01358
MTIRFGVSPIAWINDDMPELGGDTPLESVLADCQAIGFEGVELGGVFPRDPAVLKPLLDR
YGLDLVGGWYSGNLLAHSAEDEIAALQPHLALLKAMGCTVFIHAETSNAIHGARDTALSA
TPRLDAEGWTLFGARLTKVADYIAAQGLKFAYHHHLGTVVERPQDLEAFLGATGPSVGLT
VDTGHAALGGVDPVALIRAHPERVAHVHCKDVRREVFQSVIGQKGGSFLDGVLAGMFTVP
GDGGLDYAAVMQALAEINYSGWIIVEAEQDPAIANPRQYGEMGLATLKKEAAATGLRAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory