Comparing CCNA_01446 CCNA_01446 LL-diaminopimelate aminotransferase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2x5dD Crystal structure of a probable aminotransferase from pseudomonas aeruginosa (see paper)
51% identity, 92% coverage: 15:386/406 of query aligns to 1:372/380 of 2x5dD
6l1lB Apo-bacf structure from bacillus subtillis (see paper)
36% identity, 94% coverage: 8:387/406 of query aligns to 9:386/393 of 6l1lB
6l1oB Product bound bacf structure from bacillus subtillis (see paper)
36% identity, 94% coverage: 8:387/406 of query aligns to 9:386/392 of 6l1oB
6l1nA Substrate bound bacf structure from bacillus subtillis (see paper)
36% identity, 92% coverage: 15:387/406 of query aligns to 20:385/393 of 6l1nA
Sites not aligning to the query:
2o1bA Structure of aminotransferase from staphylococcus aureus
33% identity, 86% coverage: 33:382/406 of query aligns to 21:365/376 of 2o1bA
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
32% identity, 88% coverage: 32:389/406 of query aligns to 26:382/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
32% identity, 88% coverage: 32:389/406 of query aligns to 26:382/388 of 1gd9A
3jtxB Crystal structure of aminotransferase (np_283882.1) from neisseria meningitidis z2491 at 1.91 a resolution
30% identity, 93% coverage: 8:385/406 of query aligns to 5:388/393 of 3jtxB
Q58097 (5-formylfuran-3-yl)methyl phosphate transaminase; 4-HFC-P:alanine aminotransferase; EC 2.6.1.108 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
29% identity, 94% coverage: 7:389/406 of query aligns to 5:368/370 of Q58097
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
28% identity, 95% coverage: 6:392/406 of query aligns to 6:385/385 of Q56232
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
27% identity, 95% coverage: 6:389/406 of query aligns to 12:382/384 of 1o4sB
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
28% identity, 95% coverage: 6:389/406 of query aligns to 6:382/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
28% identity, 95% coverage: 6:389/406 of query aligns to 6:382/382 of 1bjwA
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
28% identity, 95% coverage: 6:389/406 of query aligns to 6:382/382 of 1b5oA
1gc4A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with aspartate (see paper)
28% identity, 95% coverage: 6:389/406 of query aligns to 6:382/382 of 1gc4A
1gc3A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with tryptophan (see paper)
28% identity, 95% coverage: 6:389/406 of query aligns to 6:382/382 of 1gc3A
1j32A Aspartate aminotransferase from phormidium lapideum
27% identity, 94% coverage: 7:389/406 of query aligns to 6:384/388 of 1j32A
1u08A Crystal structure and reactivity of ybdl from escherichia coli identify a methionine aminotransferase function. (see paper)
28% identity, 89% coverage: 28:388/406 of query aligns to 23:382/382 of 1u08A
6f77A Crystal structure of the prephenate aminotransferase from rhizobium meliloti (see paper)
27% identity, 94% coverage: 8:390/406 of query aligns to 7:396/399 of 6f77A
Q02635 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.79 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti) (see paper)
27% identity, 94% coverage: 8:390/406 of query aligns to 8:397/400 of Q02635
>CCNA_01446 CCNA_01446 LL-diaminopimelate aminotransferase
MSTDFHRIRRLPPYVFEEVNKIKARLRAEGTDIIDFGMGNPDMPTPQHIVDKLIETARDP
KAGRYSASKGVPGLRKAMANYYGRRFGVKLNPDTEVIATLGSKEGFANLAQALTGPGDVI
ICPNPAYPIHAFGFIMAGGIIRHVPALSPEEYLSNISRAVKHSVPPPSVLILSYPSNPTA
QWVDLDFYKDAVALAKKHDLLVISDVAYGEIYFDNNPPPSILQVDGAKDIAVEVNSLSKT
YAMAGWRVGMVVGNARICAALARVKSYLDYGAYTPVQVAAATALNGPQDCVDEIRGIYKS
RRDTLIKSMKAAGWDIPNPPASMFAWAKIPEAYREAGSMLFSRLLIEEAGVAVAPGIGFG
EYGEGYVRIGLVENEHRIRQAARNVKKFIANADSILAKAHNKMEQA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory