SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CCNA_01678 FitnessBrowser__Caulo:CCNA_01678 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1yleA The structure of arginine/ornithine succinyltransferase subunit ai from pseudomonas aeruginosa.
35% identity, 100% coverage: 1:334/334 of query aligns to 3:327/330 of 1yleA

query
sites
1yleA
M
 
M
L
 
L
V
 
V
V
 
M
R
 
R
P
 
P
A
 
A
G
 
Q
S
 
A
A
 
A
D
 
D
F
 
L
E
 
P
A
 
Q
L
 
V
M
 
Q
E
 
R
L
 
L
A
 
A
V
 
A
L
 
D
S
 
S
G
 
P
R
 
V
G
 
G
F
 
V
T
 
T
S
 
S
L
 
L
P
 
P
E
 
D
D
 
D
E
 
A
P
 
E
T
 
R
L
 
L
R
 
R
S
 
D
R
 
K
L
 
I
A
 
L
L
 
A
S
 
S
E
 
E
A
 
A
S
 
S
F
 
F
Q
 
A
A
 
A
G
 
E
V
 
V
A
 
S
P
 
Y
P
 
N
-
 
G
E
 
E
A
 
E
W
 
S
Y
 
Y
T
 
F
L
 
F
M
 
V
L
 
L
E
 
E
D
 
D
L
 
S
E
 
A
T
 
S
G
 
G
T
 
E
V
 
L
E
 
V
G
 
G
V
 
C
A
 
S
G
 
A
V
 
I
K
 
V
A
 
A
G
 
S
V
 
A
G
 
G
L
 
F
K
 
S
R
 
E
P
 
P
F
 
F
F
 
Y
S
 
S
F
 
F
R
 
R
V
 
N
V
 
E
T
 
T
L
 
F
A
 
V
Q
 
H
S
 
A
S
 
S
P
 
R
T
 
S
L
 
L
E
 
S
M
 
I
R
 
H
F
 
N
D
 
K
H
 
I
K
 
H
A
 
V
L
 
L
V
 
S
L
 
L
V
 
C
N
 
H
E
 
D
C
 
L
A
 
T
G
 
G
W
 
N
S
 
S
E
 
L
V
 
L
G
 
T
S
 
S
L
 
F
F
 
Y
L
 
V
R
 
Q
P
 
R
E
 
D
K
 
L
R
 
V
K
 
Q
G
 
S
G
 
V
A
 
Y
G
 
A
R
 
E
L
 
L
L
 
N
A
 
S
Q
 
R
S
 
G
R
 
R
Y
 
L
M
 
L
L
 
F
I
 
M
G
 
A
I
 
S
E
 
H
P
 
P
Q
 
E
R
 
R
F
 
F
A
 
A
E
 
D
M
 
A
V
 
V
L
 
V
A
 
V
E
|
E
L
 
I
R
 
V
G
 
G
W
 
Y
F
 
S
D
 
D
E
 
E
D
 
Q
G
 
G
R
 
E
C
 
S
P
 
P
F
 
F
W
 
W
E
 
N
H
 
A
V
 
V
S
 
G
H
 
R
K
 
N
F
 
F
F
 
F
R
 
D
L
 
L
D
 
N
F
 
Y
D
 
I
Q
 
E
A
 
A
D
 
E
L
 
K
M
 
L
S
 
S
A
 
G
S
 
-
T
 
-
D
 
-
G
 
-
Q
 
-
F
 
-
I
 
-
L
 
-
D
 
-
L
 
-
A
 
L
P
 
K
R
 
H
H
 
Y
P
 
P
I
 
I
Y
 
Y
T
 
V
E
 
P
L
 
L
L
 
L
P
 
P
E
 
D
E
 
A
A
 
A
R
 
Q
D
 
E
V
 
S
I
 
M
G
 
G
R
 
Q
V
 
V
H
 
H
R
 
P
D
 
R
G
 
A
E
 
Q
A
 
I
A
 
T
R
 
F
A
 
D
M
 
I
L
 
L
E
 
M
R
 
R
E
 
E
G
 
G
F
 
F
R
 
E
Y
 
T
Q
 
D
G
 
N
L
 
Y
V
 
I
D
|
D
L
 
I
F
 
F
D
 
D
A
 
G
G
 
G
P
 
P
T
 
T
V
 
L
A
 
H
C
 
A
P
 
R
R
 
T
D
 
S
D
 
G
I
 
I
R
 
R
T
 
S
V
 
I
R
 
A
D
 
Q
A
 
S
R
 
R
R
 
V
L
 
V
R
 
P
V
 
V
K
 
K
V
 
I
G
 
G
E
 
E
D
 
K
A
 
S
Y
 
-
G
 
G
E
 
R
E
 
P
A
 
Y
L
 
L
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V
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G
 
G
E
 
Q
V
 
L
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Q
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D
F
 
F
R
 
R
A
 
A
V
 
V
R
 
V
-
 
L
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D
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L
-
 
D
-
 
W
A
 
A
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V
 
-
L
 
-
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-
D
 
-
G
 
G
E
 
K
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P
A
 
V
I
 
A
L
 
L
G
 
S
R
 
V
D
 
E
A
 
A
M
 
A
D
 
E
A
 
A
L
 
L
G
 
G
V
 
V
G
 
G
E
 
E
G
 
G
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A
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S
V
 
V
R
 
R
V
 
L
K
 
V
A
 
A

Query Sequence

>CCNA_01678 FitnessBrowser__Caulo:CCNA_01678
MLVVRPAGSADFEALMELAVLSGRGFTSLPEDEPTLRSRLALSEASFQAGVAPPEAWYTL
MLEDLETGTVEGVAGVKAGVGLKRPFFSFRVVTLAQSSPTLEMRFDHKALVLVNECAGWS
EVGSLFLRPEKRKGGAGRLLAQSRYMLIGIEPQRFAEMVLAELRGWFDEDGRCPFWEHVS
HKFFRLDFDQADLMSASTDGQFILDLAPRHPIYTELLPEEARDVIGRVHRDGEAARAMLE
REGFRYQGLVDLFDAGPTVACPRDDIRTVRDARRLRVKVGEDAYGEEALISTGEVSRFRA
VRAPVLIDGETAILGRDAMDALGVGEGEVVRVKA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory