SitesBLAST
Comparing CCNA_01805 FitnessBrowser__Caulo:CCNA_01805 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6uziC Crystal structure of dihydrolipoyl dehydrogenase from elizabethkingia anophelis nuhp1
44% identity, 100% coverage: 3:466/466 of query aligns to 5:470/470 of 6uziC
- active site: C45 (= C42), C50 (= C47), S53 (≠ T50), V187 (≠ A188), E191 (= E192), H448 (= H445), E453 (= E450)
- binding flavin-adenine dinucleotide: I12 (= I10), G13 (= G11), G15 (= G13), P16 (= P14), G17 (= G15), E36 (= E34), K37 (≠ R35), G43 (= G40), T44 (≠ I41), C45 (= C42), G49 (= G46), C50 (= C47), S53 (≠ T50), K54 (= K51), V117 (≠ E113), G118 (≠ A114), T147 (≠ S146), G148 (= G147), I188 (= I189), R276 (≠ I276), D316 (= D313), M322 (≠ W319), L323 (= L320), A324 (= A321)
- binding zinc ion: H448 (= H445), E453 (= E450)
P14218 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of 2-oxoglutarate dehydrogenase complex; EC 1.8.1.4 from Pseudomonas fluorescens (see 2 papers)
44% identity, 100% coverage: 1:466/466 of query aligns to 1:472/478 of P14218
- M1 (= M1) modified: Initiator methionine, Removed
- 34:49 (vs. 34:42, 31% identical) binding
- C49 (= C42) modified: Disulfide link with 54, Redox-active
- C54 (= C47) modified: Disulfide link with 49, Redox-active
- K58 (= K51) binding
- G122 (≠ A114) binding
- D319 (= D313) binding
- A327 (= A321) binding
5u8uD Dihydrolipoamide dehydrogenase (lpdg) from pseudomonas aeruginosa (see paper)
44% identity, 100% coverage: 1:466/466 of query aligns to 3:474/477 of 5u8uD
- active site: P16 (= P14), L47 (= L38), C51 (= C42), C56 (= C47), S59 (≠ T50), G85 (≠ K75), V86 (≠ A76), V193 (≠ A188), E197 (= E192), S333 (= S325), F451 (≠ Y443), H453 (= H445), E458 (= E450)
- binding flavin-adenine dinucleotide: I12 (= I10), G15 (= G13), P16 (= P14), G17 (= G15), E36 (= E34), K37 (≠ R35), G49 (= G40), T50 (≠ I41), C51 (= C42), G55 (= G46), C56 (= C47), K60 (= K51), H123 (≠ E113), G124 (≠ A114), A152 (= A145), S153 (= S146), G154 (= G147), I194 (= I189), R281 (≠ I276), G320 (= G312), D321 (= D313), M327 (≠ W319), L328 (= L320), A329 (= A321), H330 (= H322), H453 (= H445), P454 (= P446)
Sites not aligning to the query:
5u8wA Dihydrolipoamide dehydrogenase (lpdg) from pseudomonas aeruginosa bound to nadh (see paper)
44% identity, 100% coverage: 2:466/466 of query aligns to 1:471/473 of 5u8wA
- active site: P13 (= P14), L44 (= L38), C48 (= C42), C53 (= C47), S56 (≠ T50), G82 (≠ K75), V83 (≠ A76), V190 (≠ A188), E194 (= E192), S330 (= S325), F448 (≠ Y443), H450 (= H445), E455 (= E450)
- binding flavin-adenine dinucleotide: I9 (= I10), G12 (= G13), P13 (= P14), G14 (= G15), E33 (= E34), K34 (≠ R35), G46 (= G40), T47 (≠ I41), C48 (= C42), G52 (= G46), C53 (= C47), K57 (= K51), H120 (≠ E113), G121 (≠ A114), A149 (= A145), S150 (= S146), G151 (= G147), S170 (≠ Y168), G317 (= G312), D318 (= D313), M324 (≠ W319), L325 (= L320), A326 (= A321), H327 (= H322), Y357 (= Y352), H450 (= H445), P451 (= P446)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I186 (= I184), G189 (= G187), V190 (≠ A188), I191 (= I189), E194 (= E192), E210 (= E208), A211 (= A209), L212 (≠ I210), A275 (= A273), V276 (= V274), G277 (= G275), R278 (≠ I276), M324 (≠ W319), L325 (= L320), V355 (≠ C350), Y357 (= Y352)
Sites not aligning to the query:
P18925 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 from Azotobacter vinelandii (see 2 papers)
44% identity, 100% coverage: 1:466/466 of query aligns to 1:472/477 of P18925
- 34:49 (vs. 34:42, 31% identical) binding
- C49 (= C42) modified: Disulfide link with 54, Redox-active
- C54 (= C47) modified: Disulfide link with 49, Redox-active
- K58 (= K51) binding
- D319 (= D313) binding
- A327 (= A321) binding
5u8vA Dihydrolipoamide dehydrogenase (lpdg) from pseudomonas aeruginosa bound to NAD+ (see paper)
44% identity, 99% coverage: 4:466/466 of query aligns to 2:470/472 of 5u8vA
- active site: P12 (= P14), L43 (= L38), C47 (= C42), C52 (= C47), S55 (≠ T50), G81 (≠ K75), V82 (≠ A76), V189 (≠ A188), E193 (= E192), S329 (= S325), F447 (≠ Y443), H449 (= H445), E454 (= E450)
- binding flavin-adenine dinucleotide: I8 (= I10), G11 (= G13), P12 (= P14), G13 (= G15), E32 (= E34), G45 (= G40), T46 (≠ I41), C47 (= C42), G51 (= G46), C52 (= C47), K56 (= K51), H119 (≠ E113), G120 (≠ A114), A148 (= A145), S149 (= S146), G150 (= G147), S169 (≠ Y168), I190 (= I189), R277 (≠ I276), G316 (= G312), D317 (= D313), M323 (≠ W319), L324 (= L320), A325 (= A321), H326 (= H322), H449 (= H445), P450 (= P446)
- binding nicotinamide-adenine-dinucleotide: I185 (= I184), G186 (= G185), G188 (= G187), V189 (≠ A188), I190 (= I189), L208 (≠ V207), E209 (= E208), A210 (= A209), V243 (= V242), V275 (= V274), G276 (= G275)
Sites not aligning to the query:
6awaA 1.83 angstrom resolution crystal structure of dihydrolipoyl dehydrogenase from pseudomonas putida in complex with fad and adenosine-5'-monophosphate.
44% identity, 100% coverage: 1:466/466 of query aligns to 1:472/475 of 6awaA
- active site: L45 (= L38), C49 (= C42), C54 (= C47), S57 (≠ T50), V191 (≠ A188), E195 (= E192), F449 (≠ Y443), H451 (= H445), E456 (= E450)
- binding adenosine monophosphate: I187 (= I184), E211 (= E208), A212 (= A209), L213 (≠ I210), V245 (= V242), V277 (= V274)
- binding flavin-adenine dinucleotide: I10 (= I10), G13 (= G13), P14 (= P14), G15 (= G15), E34 (= E34), K35 (≠ R35), T48 (≠ I41), C49 (= C42), G53 (= G46), C54 (= C47), K58 (= K51), H121 (≠ E113), G122 (≠ A114), S151 (= S146), G152 (= G147), I192 (= I189), R279 (≠ I276), G318 (= G312), D319 (= D313), M325 (≠ W319), L326 (= L320), A327 (= A321), Y358 (= Y352)
Sites not aligning to the query:
3ladA Refined crystal structure of lipoamide dehydrogenase from azotobacter vinelandii at 2.2 angstroms resolution. A comparison with the structure of glutathione reductase (see paper)
44% identity, 100% coverage: 2:466/466 of query aligns to 1:471/472 of 3ladA
- active site: L44 (= L38), C48 (= C42), C53 (= C47), S56 (≠ T50), V190 (≠ A188), E194 (= E192), F448 (≠ Y443), H450 (= H445), E455 (= E450)
- binding flavin-adenine dinucleotide: I9 (= I10), G10 (= G11), G12 (= G13), P13 (= P14), E33 (= E34), K34 (≠ R35), G46 (= G40), T47 (≠ I41), C48 (= C42), G52 (= G46), C53 (= C47), H120 (≠ E113), G121 (≠ A114), A149 (= A145), S150 (= S146), G151 (= G147), I191 (= I189), R278 (≠ I276), D318 (= D313), L325 (= L320), A326 (= A321)
3urhB Crystal structure of a dihydrolipoamide dehydrogenase from sinorhizobium meliloti 1021
43% identity, 99% coverage: 5:465/466 of query aligns to 1:465/465 of 3urhB
- active site: Y35 (≠ L38), C39 (= C42), C44 (= C47), S47 (≠ T50), V183 (≠ A188), E187 (= E192), H443 (≠ Y443), H445 (= H445), E450 (= E450)
- binding flavin-adenine dinucleotide: I6 (= I10), G7 (= G11), G9 (= G13), P10 (= P14), G11 (= G15), E30 (= E34), K31 (vs. gap), G37 (= G40), T38 (≠ I41), C39 (= C42), G43 (= G46), C44 (= C47), K48 (= K51), T111 (≠ E113), G112 (≠ A114), A140 (= A145), T141 (≠ S146), G142 (= G147), I184 (= I189), R273 (≠ I276), G312 (= G312), D313 (= D313), M319 (≠ W319), L320 (= L320), A321 (= A321), H322 (= H322)
P11959 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate complex; EC 1.8.1.4 from Geobacillus stearothermophilus (Bacillus stearothermophilus) (see paper)
41% identity, 100% coverage: 1:466/466 of query aligns to 6:467/470 of P11959
- 39:47 (vs. 34:42, 67% identical) binding
- K56 (= K51) binding
- D314 (= D313) binding
- A322 (= A321) binding
6aonA 1.72 angstrom resolution crystal structure of 2-oxoglutarate dehydrogenase complex subunit dihydrolipoamide dehydrogenase from bordetella pertussis in complex with fad
42% identity, 99% coverage: 4:466/466 of query aligns to 2:473/473 of 6aonA
- active site: P43 (≠ L38), C47 (= C42), C52 (= C47), S55 (≠ T50), V191 (≠ A188), E195 (= E192), H450 (≠ Y443), H452 (= H445), E457 (= E450)
- binding calcium ion: A218 (≠ P215), A220 (≠ E217), Q222 (≠ E219)
- binding flavin-adenine dinucleotide: I8 (= I10), G11 (= G13), P12 (= P14), G13 (= G15), D32 (≠ E34), A33 (≠ R35), W34 (≠ E36), G45 (= G40), T46 (≠ I41), C47 (= C42), G51 (= G46), C52 (= C47), K56 (= K51), K119 (= K118), G120 (= G119), T151 (≠ S146), G152 (= G147), N171 (≠ Y168), I192 (= I189), R280 (≠ I276), Y283 (≠ N279), G319 (= G312), D320 (= D313), M326 (≠ W319), L327 (= L320), A328 (= A321), H329 (= H322)
6bz0A 1.83 angstrom resolution crystal structure of dihydrolipoyl dehydrogenase from acinetobacter baumannii in complex with fad.
43% identity, 99% coverage: 4:465/466 of query aligns to 1:467/469 of 6bz0A
- active site: C45 (= C42), C50 (= C47), S53 (≠ T50), V187 (≠ A188), E191 (= E192), H447 (= H445), E452 (= E450)
- binding flavin-adenine dinucleotide: I7 (= I10), G10 (= G13), P11 (= P14), G12 (= G15), E31 (= E34), K32 (≠ R35), R33 (≠ E36), G43 (= G40), T44 (≠ I41), C45 (= C42), G49 (= G46), C50 (= C47), K54 (= K51), T117 (≠ E113), G118 (≠ A114), S147 (= S146), G148 (= G147), S167 (≠ Y168), I188 (= I189), R275 (≠ I276), Y278 (≠ N279), D315 (= D313), M321 (≠ W319), L322 (= L320), A323 (= A321), A326 (= A324), Y354 (= Y352)
1ebdA Dihydrolipoamide dehydrogenase complexed with the binding domain of the dihydrolipoamide acetylase (see paper)
41% identity, 97% coverage: 4:456/466 of query aligns to 3:451/455 of 1ebdA
- active site: P13 (= P14), L37 (= L38), C41 (= C42), C46 (= C47), S49 (≠ T50), N74 (≠ K75), V75 (≠ A76), Y180 (≠ A188), E184 (= E192), S320 (= S325), H438 (≠ Y443), H440 (= H445), E445 (= E450)
- binding flavin-adenine dinucleotide: G10 (= G11), G12 (= G13), P13 (= P14), V32 (≠ I33), E33 (= E34), K34 (≠ R35), G39 (= G40), V40 (≠ I41), C41 (= C42), G45 (= G46), C46 (= C47), K50 (= K51), E112 (= E113), A113 (= A114), T141 (≠ S146), G142 (= G147), Y180 (≠ A188), I181 (= I189), R268 (≠ I276), D308 (= D313), A314 (≠ W319), L315 (= L320), A316 (= A321)
7kmyA Structure of mtb lpd bound to 010705 (see paper)
43% identity, 97% coverage: 3:454/466 of query aligns to 3:453/465 of 7kmyA
- active site: W38 (≠ L38), C42 (= C42), C47 (= C47), S50 (≠ T50), A182 (= A188), E186 (= E192), H442 (≠ Y443), H444 (= H445), E449 (= E450)
- binding flavin-adenine dinucleotide: L10 (≠ I10), G11 (= G11), G13 (= G13), P14 (= P14), V33 (≠ I33), E34 (= E34), P35 (≠ R35), Y37 (≠ N37), G40 (= G40), V41 (≠ I41), C42 (= C42), G46 (= G46), C47 (= C47), K51 (= K51), Y113 (≠ E113), G114 (≠ A114), A142 (= A145), T143 (≠ S146), G144 (= G147), Y162 (= Y168), I183 (= I189), Y277 (vs. gap), G309 (= G312), D310 (= D313), Q316 (≠ W319), L317 (= L320), A318 (= A321)
- binding N~2~-methyl-N~2~-[(5-methyl-1H-indazol-7-yl)sulfonyl]-N-(1-methyl-2-oxo-1,2-dihydropyridin-4-yl)glycinamide: Y17 (= Y17), R94 (≠ M94), G97 (= G97), F100 (= F100), E322 (≠ S325), A382 (≠ V383), H444 (= H445), E449 (= E450)
Sites not aligning to the query:
4m52A Structure of mtb lpd bound to sl827 (see paper)
43% identity, 97% coverage: 3:454/466 of query aligns to 3:453/465 of 4m52A
- active site: W38 (≠ L38), C42 (= C42), C47 (= C47), S50 (≠ T50), A182 (= A188), E186 (= E192), H442 (≠ Y443), H444 (= H445), E449 (= E450)
- binding flavin-adenine dinucleotide: L10 (≠ I10), G11 (= G11), G13 (= G13), P14 (= P14), V33 (≠ I33), E34 (= E34), P35 (≠ R35), Y37 (≠ N37), V41 (≠ I41), C42 (= C42), G46 (= G46), C47 (= C47), K51 (= K51), Y113 (≠ E113), G114 (≠ A114), A142 (= A145), T143 (≠ S146), Y162 (= Y168), I183 (= I189), F270 (≠ I276), Y277 (vs. gap), G309 (= G312), D310 (= D313), Q316 (≠ W319), L317 (= L320), A318 (= A321)
- binding N~2~-[(2-amino-5-bromopyridin-3-yl)sulfonyl]-N-(4-methoxyphenyl)-N~2~-methylglycinamide: P14 (= P14), Y17 (= Y17), R94 (≠ M94), F100 (= F100), E322 (≠ S325), A382 (≠ V383), H444 (= H445)
Sites not aligning to the query:
3ii4A Structure of mycobacterial lipoamide dehydrogenase bound to a triazaspirodimethoxybenzoyl inhibitor (see paper)
43% identity, 97% coverage: 3:454/466 of query aligns to 1:451/463 of 3ii4A
- active site: W36 (≠ L38), C40 (= C42), C45 (= C47), S48 (≠ T50), A180 (= A188), E184 (= E192), H440 (≠ Y443), H442 (= H445), E447 (= E450)
- binding N-[2-(2,4-dichlorophenyl)ethyl]-2-{8-[(2,4-dimethoxyphenyl)carbonyl]-4-oxo-1-phenyl-1,3,8-triazaspiro[4.5]dec-3-yl}acetamide: R146 (= R151), A180 (= A188), I181 (= I189), E184 (= E192), N208 (≠ V216), E209 (= E217), F268 (≠ I276), R287 (= R292), G311 (= G316), Q314 (≠ W319), L315 (= L320), R346 (≠ G349), A347 (≠ C350)
- binding flavin-adenine dinucleotide: L8 (≠ I10), G9 (= G11), G11 (= G13), P12 (= P14), G13 (= G15), V31 (≠ I33), E32 (= E34), P33 (≠ R35), Y35 (≠ N37), G38 (= G40), V39 (≠ I41), C40 (= C42), G44 (= G46), C45 (= C47), K49 (= K51), Y111 (≠ E113), G112 (≠ A114), A140 (= A145), T141 (≠ S146), G142 (= G147), Y160 (= Y168), I181 (= I189), Y275 (vs. gap), G307 (= G312), D308 (= D313), Q314 (≠ W319), L315 (= L320), A316 (= A321)
8u0qA Co-crystal structure of optimized analog tdi-13537 provided new insights into the potency determinants of the sulfonamide inhibitor series (see paper)
43% identity, 97% coverage: 3:454/466 of query aligns to 2:452/464 of 8u0qA
- binding flavin-adenine dinucleotide: L9 (≠ I10), G10 (= G11), G12 (= G13), P13 (= P14), G14 (= G15), V32 (≠ I33), E33 (= E34), P34 (≠ R35), Y36 (≠ N37), G39 (= G40), V40 (≠ I41), C41 (= C42), G45 (= G46), C46 (= C47), K50 (= K51), Y112 (≠ E113), G113 (≠ A114), A141 (= A145), T142 (≠ S146), G143 (= G147), Y161 (= Y168), I182 (= I189), Y276 (vs. gap), G308 (= G312), D309 (= D313), Q315 (≠ W319), L316 (= L320), A317 (= A321), H318 (= H322)
- binding N-(3-acetamidophenyl)-N~2~-[3-(difluoromethyl)-5-methylbenzene-1-sulfonyl]-N~2~-methylglycinamide: Y16 (= Y17), R93 (≠ M94), G96 (= G97), F99 (= F100), E321 (≠ S325), A381 (≠ V383), A383 (≠ G385), H443 (= H445), E448 (= E450)
Sites not aligning to the query:
8ct4A Cryo-em structure of mtb lpd bound to inhibitor complex with 2-((2- cyano-n,5-dimethyl-1h-indole)-7-sulfonamido)-n-(4-(oxetan-3-yl)-3,4- dihydro-2h-benzo[b] [1,4]oxazin-7-yl)acetamide
43% identity, 97% coverage: 3:454/466 of query aligns to 2:452/464 of 8ct4A
- binding flavin-adenine dinucleotide: L9 (≠ I10), G10 (= G11), G12 (= G13), P13 (= P14), E33 (= E34), P34 (≠ R35), Y36 (≠ N37), G39 (= G40), V40 (≠ I41), C41 (= C42), G45 (= G46), C46 (= C47), K50 (= K51), Y112 (≠ E113), G113 (≠ A114), T142 (≠ S146), G143 (= G147), Y161 (= Y168), I182 (= I189), Y276 (vs. gap), D309 (= D313), Q315 (≠ W319), L316 (= L320), A317 (= A321)
- binding N~2~-(2-cyano-5-methyl-1H-indole-7-sulfonyl)-N~2~-methyl-N-[4-(oxetan-3-yl)-3,4-dihydro-2H-1,4-benzoxazin-7-yl]glycinamide: Y16 (= Y17), R93 (≠ M94), F99 (= F100), E321 (≠ S325), F377 (= F379), A381 (≠ V383), A383 (≠ G385), H443 (= H445), E448 (= E450), A449 (= A451), E452 (= E454)
Sites not aligning to the query:
P9WHH9 Dihydrolipoyl dehydrogenase; LPD; Component of peroxynitrite reductase/peroxidase complex; Component of PNR/P; Dihydrolipoamide dehydrogenase; E3 component of alpha-ketoacid dehydrogenase complexes; EC 1.8.1.4 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
43% identity, 97% coverage: 3:454/466 of query aligns to 2:452/464 of P9WHH9
- D5 (= D6) mutation to A: Reduces lipoamide dehydrogenase activity by 95%.
- 33:41 (vs. 34:42, 44% identical) binding
- C41 (= C42) modified: Disulfide link with 46, Redox-active
- N43 (= N44) mutation to A: Reduces lipoamide dehydrogenase activity by 89%.
- C46 (= C47) modified: Disulfide link with 41, Redox-active
- K50 (= K51) binding
- R93 (≠ M94) mutation to A: Reduces lipoamide dehydrogenase activity by 94%.; mutation to E: Reduces lipoamide dehydrogenase activity by 96%.
- K103 (= K104) mutation to E: Reduces lipoamide dehydrogenase activity by 82%.
- D309 (= D313) binding
- A317 (= A321) binding
- H386 (≠ V388) mutation to K: Reduces lipoamide dehydrogenase activity by 91%.
Sites not aligning to the query:
- 464 F→A: Reduces lipoamide dehydrogenase activity by 95%.
2yquB Crystal structures and evolutionary relationship of two different lipoamide dehydrogenase(e3s) from thermus thermophilus
41% identity, 99% coverage: 5:466/466 of query aligns to 2:455/455 of 2yquB
- active site: P11 (= P14), L36 (= L38), C40 (= C42), C45 (= C47), S48 (≠ T50), G72 (≠ K75), V73 (≠ A76), V177 (≠ A188), E181 (= E192), S314 (= S325), H432 (≠ Y443), H434 (= H445), E439 (= E450)
- binding carbonate ion: A310 (= A321), S314 (= S325), S423 (≠ T434), D426 (= D437)
- binding flavin-adenine dinucleotide: G8 (= G11), G10 (= G13), P11 (= P14), G12 (= G15), E31 (= E34), K32 (≠ R35), G38 (= G40), T39 (≠ I41), C40 (= C42), R42 (≠ N44), G44 (= G46), C45 (= C47), K49 (= K51), T110 (≠ E113), A111 (= A114), T137 (≠ S146), G138 (= G147), I178 (= I189), Y265 (≠ N279), G301 (= G312), D302 (= D313), M308 (≠ W319), L309 (= L320), A310 (= A321), H311 (= H322)
Query Sequence
>CCNA_01805 FitnessBrowser__Caulo:CCNA_01805
MSTEFDVVVIGAGPGGYVAAIRASQLGLNTAIIERENLGGICLNWGCIPTKALLKSGEVY
EQLSHLGGYGLSVEKASFDFGKIIERSRGVAKNMSGGIAFLMKKHKIEVIEGEAKLEKGA
PAPKVVVALKAGGSRTVQAKNVILASGARAREIPAIGAVSDGDKIWTYRDALAPKSMPKS
LVVIGSGAIGIEFASFYRALGAEVTVVEAIDRIMPVEDEEVSKAAQKAFEKRGIKFRVGA
KVSKIEKTKDGVAVTVEAGGKIEQLTAEKCIVAVGIAPNNDGLEALGVSLDRGHVVTDKH
CRTNVPGLYAIGDIAGAPWLAHKASHEGIHAAEAIAGYKTPNVLSPIPGCTYANPQVASV
GYTEAGAKAAGIEVKAGRFPFRVNGKAVASGETEGFVKTVFDAKTGALIGAHMIGHEVTE
MIQGFVTAITLEATEEDLHGVVYAHPTMSEAMHEAALDAYGRVLHI
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory