SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CCNA_02315 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2xiuA High resolution structure of mtsl-tagged cylr2. (see paper)
56% identity, 92% coverage: 3:61/64 of query aligns to 4:62/66 of 2xiuA

query
sites
2xiuA
N
 
N
R
 
N
L
 
L
K
 
K
V
 
L
L
x
I
R
 
R
A
 
E
E
 
K
R
 
K
D
 
K
W
 
I
S
 
S
Q
 
Q
A
 
S
D
 
E
L
 
L
A
 
A
D
 
A
R
 
L
L
 
L
E
 
E
V
 
V
S
 
S
R
 
R
Q
 
Q
T
 
T
I
 
I
N
 
N
A
 
G
L
 
I
E
 
E
T
 
K
G
 
N
K
 
K
Y
 
Y
D
 
N
P
 
P
S
 
S
L
 
L
P
 
Q
L
 
L
A
 
A
F
 
L
K
 
K
I
 
I
A
 
A
R
 
Y
L
 
Y
F
 
L
G
 
N
Q
x
C
P
 
P
I
 
L
E
 
E
S
 
D
I
 
I
F
 
F
Q
 
Q

Query Sequence

>CCNA_02315
MKNRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGQPIESIF
QDEA

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory