Comparing CCNA_02615 FitnessBrowser__Caulo:CCNA_02615 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 8 hits to proteins with known functional sites (download)
4aq6D Substrate bound homogentisate 1,2-dioxygenase (see paper)
63% identity, 99% coverage: 2:421/425 of query aligns to 2:420/427 of 4aq6D
3zdsF Structure of homogentisate 1,2-dioxygenase in complex with reaction intermediates of homogentisate with oxygen. (see paper)
63% identity, 99% coverage: 2:421/425 of query aligns to 1:419/426 of 3zdsF
3zdsC Structure of homogentisate 1,2-dioxygenase in complex with reaction intermediates of homogentisate with oxygen. (see paper)
63% identity, 99% coverage: 2:421/425 of query aligns to 1:419/426 of 3zdsC
Q88E47 Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
63% identity, 99% coverage: 2:421/425 of query aligns to 8:426/433 of Q88E47
3zdsA Structure of homogentisate 1,2-dioxygenase in complex with reaction intermediates of homogentisate with oxygen. (see paper)
63% identity, 99% coverage: 3:421/425 of query aligns to 1:418/425 of 3zdsA
Q93099 Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Homo sapiens (Human) (see 13 papers)
54% identity, 98% coverage: 2:416/425 of query aligns to 3:427/445 of Q93099
Q9Y041 Homogentisate 1,2-dioxygenase; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Caenorhabditis elegans (see paper)
53% identity, 99% coverage: 2:421/425 of query aligns to 6:431/437 of Q9Y041
1ey2A Human homogentisate dioxygenase with fe(ii) (see paper)
53% identity, 97% coverage: 2:412/425 of query aligns to 2:413/419 of 1ey2A
>CCNA_02615 FitnessBrowser__Caulo:CCNA_02615
MDLRYQTGFGSYFETEAHPGALPVGRNSPQKVPFGLYAEQLSGSAFTAPRHENRRTWLYR
LRPSAGHEAYQPYAQDKLVSAFPGPATPNRLRWSPLEIPAAPTDFVDGLVSLAGNADAAT
LGGIAAHVYLVNVSMKNRVFYNADGEMLIVPQMGELTLVTEMGVLKAGPGHIAVIPRGVR
FRVEVEGPARGYVCENYGAAFRLPELGPIGANGLANPRDFEAPVAAFEDIDTPTQVIQKF
QGALWAATWDHSPLDVVAWHGNLTPYRYDLSRFNTINTVSYDHPDPSIFTVLTSPSDTPG
TANCDFVIFPPRWMVAEDTFRPPWFHRNVMSEFMGLIHGAYDAKAGGFVPGGASLHNCMS
DHGPDVASHKKATEVVLAPHKIDGTMAFMFESRWVFRPTHLALESAALQSDYDACWTGFP
KARLS
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory