SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CCNA_03236 FitnessBrowser__Caulo:CCNA_03236 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
27% identity, 72% coverage: 61:270/291 of query aligns to 53:272/285 of 7cagA

query
sites
7cagA
L
 
L
K
 
A
Y
 
N
Y
 
Y
E
 
V
K
 
T
L
 
V
F
 
L
N
 
T
N
 
D
S
 
G
E
 
Y
L
 
W
L
 
W
E
 
T
A
 
A
F
 
F
G
 
A
N
 
V
S
 
T
L
 
L
T
 
G
I
 
I
A
 
T
A
 
V
A
 
V
S
 
S
T
 
V
V
 
A
I
 
I
S
 
E
L
 
F
F
 
A
L
 
L
G
 
G
A
 
L
A
 
A
V
 
L
A
 
A
L
 
L
A
 
V
L
 
M
W
 
H
R
 
R
F
 
T
R
 
I
F
 
F
P
 
-
G
 
G
K
 
K
T
 
G
A
 
A
V
 
V
D
 
R
G
 
T
A
 
A
M
 
I
A
 
L
L
 
I
P
 
P
I
 
Y
V
 
G
V
 
I
P
 
V
E
 
T
I
 
V
C
 
A
M
 
A
G
 
S
V
 
Y
A
 
S
M
 
W
L
 
Y
V
 
Y
-
 
A
-
 
W
-
 
T
-
 
P
-
 
G
-
 
T
-
 
G
F
 
Y
F
 
L
A
 
A
K
 
N
V
 
L
L
 
L
P
 
P
W
 
-
P
 
-
Q
 
E
G
 
G
M
 
S
P
 
A
W
 
-
P
 
P
L
 
L
-
 
T
-
 
D
-
 
Q
-
 
L
-
 
P
N
 
S
L
 
L
G
 
A
A
 
I
I
 
V
I
 
V
I
 
L
A
 
A
H
x
E
V
 
V
S
 
W
F
x
K
S
 
T
F
 
T
P
 
P
F
 
F
V
 
M
A
 
A
V
 
L
V
 
L
V
 
L
R
 
L
A
 
A
R
 
G
M
 
L
A
 
A
S
 
L
F
 
V
N
 
P
R
 
Q
E
 
D
M
 
L
E
 
L
E
 
N
A
 
A
A
 
A
R
 
Q
D
 
V
L
 
D
G
 
G
A
 
A
G
 
G
E
 
P
F
 
W
R
 
K
T
 
R
I
 
L
K
 
T
D
 
K
V
 
V
I
 
I
L
 
L
P
 
P
H
 
M
M
 
I
A
 
K
P
 
P
S
 
A
L
 
I
I
 
L
A
 
V
G
 
A
A
 
L
L
 
L
L
 
F
A
x
R
F
 
-
T
 
-
L
 
-
S
 
T
L
 
L
D
|
D
D
 
A
F
 
F
V
 
R
-
 
I
-
 
F
-
 
D
-
 
N
I
 
I
T
 
Y
F
 
I
F
 
L
T
 
T
A
 
G
G
 
G
P
 
S
-
 
N
D
 
D
T
 
T
V
 
G
T
 
S
F
 
V
P
 
S
V
 
I
K
 
L
V
 
G
Y
 
Y
S
 
D
M
 
N
V
 
L
R
 
F
F
 
K
S
 
A
V
 
F
T
 
N
P
 
V
E
 
G
V
 
L
N
 
G
A
 
S
A
 
A
S
 
I
T
 
S
V
 
V
L
 
L
I
 
I
V
 
F
L
 
L
T
 
S
V
 
V
L
 
A
L
 
I
T
 
I
A
 
A

Query Sequence

>CCNA_03236 FitnessBrowser__Caulo:CCNA_03236
MGGGVLMAKKSAPGPLEYLRRWQMQAWLAAVFIFLYAPLIALMAFSFNDSKRNIVWKGFT
LKYYEKLFNNSELLEAFGNSLTIAAASTVISLFLGAAVALALWRFRFPGKTAVDGAMALP
IVVPEICMGVAMLVFFAKVLPWPQGMPWPLNLGAIIIAHVSFSFPFVAVVVRARMASFNR
EMEEAARDLGAGEFRTIKDVILPHMAPSLIAGALLAFTLSLDDFVITFFTAGPDTVTFPV
KVYSMVRFSVTPEVNAASTVLIVLTVLLTAAALKLQGNPAAAAGHGAKDGK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory