Comparing CCNA_03278 CCNA_03278 aminobutyraldehyde dehydrogenase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
3dmeA Crystal structure of conserved exported protein from bordetella pertussis. Northeast structural genomics target ber141
52% identity, 98% coverage: 5:368/372 of query aligns to 2:365/366 of 3dmeA
8w78A Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase in complex with fad and 2-oxoglutarate (see paper)
28% identity, 93% coverage: 23:368/372 of query aligns to 22:403/410 of 8w78A
Sites not aligning to the query:
8w7fB Structure of drosophila melanogaster l-2-hydroxyglutarate dehydrogenase bound with fad and a sulfate ion (see paper)
28% identity, 93% coverage: 23:368/372 of query aligns to 22:405/412 of 8w7fB
Sites not aligning to the query:
4x9mA Oxidized l-alpha-glycerophosphate oxidase from mycoplasma pneumoniae with fad bound (see paper)
25% identity, 95% coverage: 7:360/372 of query aligns to 5:357/384 of 4x9mA
P75063 Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1) (Mycoplasmoides pneumoniae) (see paper)
25% identity, 95% coverage: 7:360/372 of query aligns to 5:357/384 of P75063
7koeC Electron bifurcating flavoprotein fix/etfabcx (see paper)
48% identity, 15% coverage: 3:58/372 of query aligns to 2:50/438 of 7koeC
Sites not aligning to the query:
>CCNA_03278 CCNA_03278 aminobutyraldehyde dehydrogenase
MSEFDFDVVVVGAGAVGLACGYALSRRGLVVAVLEEQGRIGEGVSSRNSEVIHGGLYYPT
GSLKAKLCVQGRRALYAFCDAHKVPYKKCGKLVVATSEDEIARLDTIWEQALANDVEGME
RLTGAQARALEPGLNAHAALLSPESGVFASHDYMLALQGEIEAAGGAVVLSTPFEGAEPL
AGGGFRVRAGGAEPTDLTCRLLVTAPGLSSQAVAGRIEGYPAEQIPKAHFGKGIYFRLSG
KAPFQRLIYPPPIHGALGTHYRNDMGGQAVFGPDLEYVAAPDYSVDPAKADAFAAYIRKF
WPDLPADRLVPDYAGVRPKLHGPGEPQPDFQLRGVEDHGLAGLMALFGIESPGLTSSLAI
GETVAERLCGAS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory