SitesBLAST – Find functional sites

 

SitesBLAST

Comparing CCNA_03778 FitnessBrowser__Caulo:CCNA_03778 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AAC6 Modulator of FtsH protease YccA from Escherichia coli (strain K12) (see 2 papers)
33% identity, 49% coverage: 125:246/250 of query aligns to 103:214/219 of P0AAC6

query
sites
P0AAC6
G
 
G
E
 
D
S
 
V
V
 
I
A
 
A
A
 
M
T
 
A
F
 
L
F
 
G
V
 
G
T
 
T
A
 
A
T
 
L
A
 
V
F
 
F
G
 
F
G
 
C
L
 
C
S
 
S
L
 
A
F
 
Y
G
 
V
Y
 
L
T
 
T
T
 
T
K
 
R
K
 
K
D
 
D
L
 
M
T
 
S
G
 
F
F
 
L
G
 
G
S
 
G
F
 
M
L
 
L
M
 
M
M
 
A
G
 
G
V
 
I
I
 
V
G
 
V
L
 
V
I
 
L
V
 
I
A
 
G
S
 
M
I
 
V
V
 
A
S
 
N
I
 
I
F
 
F
L
 
L
K
 
Q
S
 
L
P
 
P
A
 
A
L
 
L
L
 
H
F
 
L
A
 
A
I
 
I
N
 
S
V
 
A
L
 
V
G
 
F
V
 
I
L
 
L
I
 
I
F
 
S
S
 
S
G
 
G
L
 
A
I
 
I
A
 
L
Y
 
F
D
 
E
T
 
T
Q
 
S
R
 
N
L
 
I
K
 
I
M
 
-
T
 
-
Y
 
-
Y
 
-
E
 
-
M
 
H
G
 
G
G
 
G
D
 
E
R
 
-
A
 
-
S
 
-
M
 
-
A
 
-
V
 
-
A
 
-
T
 
T
N
 
N
F
 
Y
-
 
I
-
 
R
G
 
A
A
 
T
L
 
V
S
 
S
L
 
L
Y
 
Y
I
 
V
N
 
S
F
 
L
I
 
Y
N
 
N
L
 
I
F
 
F
Q
 
V
F
 
S
L
 
L
L
 
L
S
 
S
F
 
I
F
 
L
G
 
G

Sites not aligning to the query:

Query Sequence

>CCNA_03778 FitnessBrowser__Caulo:CCNA_03778
MNDFNRGYARSIPADRADMSVDAGLRKFMLGVYNKVALGLVVSGALAYATSSVPAVRDLL
FVVQGGRLAGVTPLYMVVAFAPLVLMLIAGFAMRNPKPETAGALYWTIVSLIGASLGSVM
LRYTGESVAATFFVTATAFGGLSLFGYTTKKDLTGFGSFLMMGVIGLIVASIVSIFLKSP
ALLFAINVLGVLIFSGLIAYDTQRLKMTYYEMGGDRASMAVATNFGALSLYINFINLFQF
LLSFFGGNRE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory