Comparing CCNA_03810 FitnessBrowser__Caulo:CCNA_03810 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q9AT00 Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic; ABC transporter I family member 13; ABC transporter ABCI.13; AtABCI13; Non-intrinsic ABC protein 11; AtNAP11 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
38% identity, 96% coverage: 8:252/256 of query aligns to 85:343/345 of Q9AT00
7chaI Cryo-em structure of p.Aeruginosa mlafebd with amppnp (see paper)
38% identity, 95% coverage: 11:252/256 of query aligns to 7:247/262 of 7chaI
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
35% identity, 95% coverage: 11:252/256 of query aligns to 8:248/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
35% identity, 95% coverage: 11:252/256 of query aligns to 8:248/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
35% identity, 95% coverage: 11:252/256 of query aligns to 6:246/253 of 6z5uK
7ch8I Cryo-em structure of p.Aeruginosa mlafebd with adp-v (see paper)
37% identity, 95% coverage: 11:252/256 of query aligns to 7:244/259 of 7ch8I
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state (see paper)
37% identity, 92% coverage: 18:252/256 of query aligns to 15:248/264 of 6xgyA
Sites not aligning to the query:
7ch6C Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
37% identity, 92% coverage: 18:252/256 of query aligns to 15:248/265 of 7ch6C
Sites not aligning to the query:
7cgnB The overall structure of the mlafedb complex in atp-bound eqtall conformation (mutation of e170q on mlaf) (see paper)
37% identity, 92% coverage: 18:252/256 of query aligns to 15:248/263 of 7cgnB
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
37% identity, 89% coverage: 6:234/256 of query aligns to 1:225/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 97% coverage: 8:256/256 of query aligns to 2:253/343 of P30750
Sites not aligning to the query:
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
37% identity, 88% coverage: 27:250/256 of query aligns to 46:269/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
37% identity, 88% coverage: 27:250/256 of query aligns to 46:269/382 of 7aheC
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
33% identity, 97% coverage: 8:256/256 of query aligns to 3:254/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
33% identity, 97% coverage: 8:256/256 of query aligns to 3:254/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
33% identity, 97% coverage: 8:256/256 of query aligns to 3:254/344 of 6cvlD
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 95% coverage: 2:244/256 of query aligns to 12:248/378 of P69874
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
36% identity, 84% coverage: 27:241/256 of query aligns to 46:260/260 of 7ahdC
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
35% identity, 86% coverage: 13:232/256 of query aligns to 9:225/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
35% identity, 86% coverage: 13:232/256 of query aligns to 9:225/242 of 3c41J
>CCNA_03810 FitnessBrowser__Caulo:CCNA_03810
MTSQVPKLAWKGVTKQFGDRKVLDQLDLSVAPGRSLVIIGGSGQGKSVTIKTALGLLRPE
AGAIELDGKNVVGLSETQRRKLFSRVGVLFQGAALFDSLTIWENVAFRLINADGVPRRKA
RDRAIEALEQVRLSADVAERFPSELSGGMQKRAGLARAVVARPEILFFDEPTTGLDPITA
AAINQLISDQVRRLGSTAVSITHDLASAQTIGDEIAMLHGGKIIWRGPAAELATTDNPYV
RQFVEGRAEGPISETH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory