SitesBLAST – Find functional sites

 

SitesBLAST

Comparing DDA3937_RS06135 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P69428 Sec-independent protein translocase protein TatA from Escherichia coli (strain K12) (see paper)
63% identity, 81% coverage: 1:56/69 of query aligns to 1:56/89 of P69428

query
sites
P69428
M
 
M
E
 
G
G
 
G
I
 
I
S
 
S
I
 
I
A
 
W
K
 
Q
L
 
L
L
 
L
V
 
I
I
 
I
G
 
A
A
 
V
L
 
I
I
 
V
V
 
V
L
 
L
L
 
L
F
 
F
G
 
G
T
 
T
N
 
K
K
 
K
L
 
L
R
 
G
S
 
S
L
 
I
G
 
G
S
 
S
D
 
D
L
 
L
G
 
G
A
 
A
A
 
S
I
 
I
K
 
K
G
 
G
F
|
F
K
 
K
K
 
K
S
 
A
M
 
M
S
 
S
D
 
D
E
 
D
Q
 
E
P
 
P
A
 
K
A
 
Q
K
 
D
S
 
K
S
 
T
A
 
S
Q
 
Q
D
 
D

Query Sequence

>DDA3937_RS06135
MEGISIAKLLVIGALIVLLFGTNKLRSLGSDLGAAIKGFKKSMSDEQPAAKSSAQDEHPA
AISENRPKE

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SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory