SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_0010 FitnessBrowser__PS:Dsui_0010 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

1nxjA Structure of rv3853 from mycobacterium tuberculosis (see paper)
46% identity, 94% coverage: 5:157/163 of query aligns to 7:155/156 of 1nxjA

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1nxjA
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2yjvC Crystal structure of e. Coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb (see paper)
44% identity, 98% coverage: 3:162/163 of query aligns to 2:157/158 of 2yjvC

query
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2yjvC
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Query Sequence

>Dsui_0010 FitnessBrowser__PS:Dsui_0010
MSFTTPDLCDANEAAIGHTLRVVTPMFKAYGGRARFCGRIHTLKIFEDNSLVREALGQPG
QGKVLVVDGGGSLRCALVGDQLAVLAQKNGWEGIVVYGCIRDSAEINRTDLGVRALDTHP
QKSIKKGVGDQNIDVTFGGVTFKPEEWIYVDEDGVIVSATPLL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory