SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_0094 FitnessBrowser__PS:Dsui_0094 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

6n2oC 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
26% identity, 95% coverage: 8:202/205 of query aligns to 7:185/572 of 6n2oC

query
sites
6n2oC
I
 
I
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R
V
 
V
V
 
A
G
 
G
I
 
E
G
 
G
G
|
G
Q
 
E
G
|
G
V
x
I
M
x
I
T
x
S
A
 
S
T
 
G
E
 
D
I
 
F
L
 
I
A
 
A
E
 
A
A
 
A
A
 
C
I
 
A
A
 
R
L
 
A
G
 
G
H
 
L
D
 
E
V
 
V
K
 
Y
K
 
T
T
 
F
E
 
K
V
 
T
A
x
F
G
 
P
M
x
A
A
x
E
Q
x
I
R
 
K
G
 
G
G
 
G
V
 
Y
V
 
A
S
 
M
S
 
Y
H
 
Q
L
 
V
R
 
R
F
 
A
G
 
S
P
 
S
K
 
E
V
 
K
L
 
L
S
 
Y
P
 
C
Q
 
Q
I
 
-
T
 
-
P
 
G
G
 
D
T
 
T
A
 
F
H
 
D
V
 
V
L
 
F
L
 
C
G
 
A
F
 
F
E
 
N
A
 
G
A
 
-
E
 
E
A
 
A
M
 
Y
R
 
E
W
 
Q
R
 
N
H
 
K
M
 
D
L
 
K
V
 
I
P
 
K
E
 
P
G
 
G
I
 
T
A
 
A
L
 
F
M
 
-
N
 
-
T
 
-
A
 
-
Q
 
-
L
 
-
T
 
-
P
 
-
P
 
-
V
 
-
V
 
-
D
 
-
L
 
-
G
 
-
L
 
V
Y
 
Y
D
 
D
Y
 
Y
P
 
P
A
 
G
-
 
G
D
 
D
P
 
F
V
 
E
G
 
P
S
 
D
M
 
E
K
 
I
D
 
P
S
 
E
G
 
G
C
 
V
R
 
F
V
 
A
V
 
Y
A
 
P
F
 
I
D
 
P
A
 
M
M
 
S
A
 
Q
I
 
T
A
 
A
K
 
K
D
 
E
L
 
M
G
 
K
D
 
S
I
 
Y
R
|
R
L
 
S
G
 
K
N
|
N
T
 
M
V
 
V
M
 
A
L
 
L
G
 
G
A
 
A
V
 
L
A
 
S
D
 
E
H
 
L
L
 
F
P
 
N
F
 
I
S
 
S
A
 
E
D
 
N
I
 
T
L
 
L
L
 
K
N
 
E
C
 
V
I
 
L
L
 
S
Q
 
D
R
 
K
F
|
F
A
 
G
R
 
K
K
 
K
G
 
G
E
 
E
K
 
E
V
 
V
V
 
L
E
 
A
Q
 
F
N
|
N
R
 
L
K
 
E
A
 
A
F
 
F
A
 
D
A
 
K
G
 
G
R
 
K
A
 
A
A
 
L
V
 
A
A
 
K
A
 
A
T
 
L
A
 
T
E
 
K
A
 
A

Sites not aligning to the query:

6n2oA 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
26% identity, 95% coverage: 8:202/205 of query aligns to 7:185/572 of 6n2oA

query
sites
6n2oA
I
 
I
L
 
R
V
 
V
V
 
A
G
 
G
I
 
E
G
 
G
G
|
G
Q
 
E
G
|
G
V
 
I
M
 
I
T
x
S
A
 
S
T
 
G
E
 
D
I
 
F
L
 
I
A
 
A
E
 
A
A
 
A
A
 
C
I
 
A
A
 
R
L
 
A
G
 
G
H
 
L
D
 
E
V
 
V
K
 
Y
K
 
T
T
 
F
E
 
K
V
 
T
A
 
F
G
 
P
M
 
A
A
 
E
Q
 
I
R
 
K
G
 
G
G
 
G
V
 
Y
V
 
A
S
 
M
S
 
Y
H
 
Q
L
 
V
R
 
R
F
 
A
G
 
S
P
 
S
K
 
E
V
 
K
L
 
L
S
 
Y
P
 
C
Q
 
Q
I
 
-
T
 
-
P
 
G
G
 
D
T
 
T
A
 
F
H
 
D
V
 
V
L
 
F
L
 
C
G
 
A
F
 
F
E
 
N
A
 
G
A
 
-
E
 
E
A
 
A
M
 
Y
R
 
E
W
 
Q
R
 
N
H
 
K
M
 
D
L
 
K
V
 
I
P
 
K
E
 
P
G
 
G
I
 
T
A
 
A
L
 
F
M
 
-
N
 
-
T
 
-
A
 
-
Q
 
-
L
 
-
T
 
-
P
 
-
P
 
-
V
 
-
V
 
-
D
 
-
L
 
-
G
 
-
L
 
V
Y
 
Y
D
 
D
Y
 
Y
P
 
P
A
 
G
-
 
G
D
 
D
P
 
F
V
 
E
G
 
P
S
 
D
M
 
E
K
 
I
D
 
P
S
 
E
G
 
G
C
 
V
R
 
F
V
 
A
V
 
Y
A
 
P
F
 
I
D
 
P
A
 
M
M
 
S
A
 
Q
I
 
T
A
 
A
K
 
K
D
 
E
L
 
M
G
 
K
D
 
S
I
 
Y
R
 
R
L
 
S
G
 
K
N
|
N
T
 
M
V
 
V
M
 
A
L
 
L
G
 
G
A
 
A
V
 
L
A
 
S
D
 
E
H
 
L
L
 
F
P
 
N
F
 
I
S
 
S
A
 
E
D
 
N
I
 
T
L
 
L
L
 
K
N
 
E
C
 
V
I
 
L
L
 
S
Q
 
D
R
x
K
F
 
F
A
 
G
R
 
K
K
 
K
G
 
G
E
 
E
K
 
E
V
 
V
V
 
L
E
 
A
Q
 
F
N
 
N
R
 
L
K
 
E
A
 
A
F
 
F
A
 
D
A
 
K
G
 
G
R
 
K
A
 
A
A
 
L
V
 
A
A
 
K
A
 
A
T
 
L
A
 
T
E
 
K
A
 
A

Sites not aligning to the query:

6n2nA Crystal structure of 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus (see paper)
26% identity, 95% coverage: 8:202/205 of query aligns to 7:185/572 of 6n2nA

query
sites
6n2nA
I
 
I
L
 
R
V
 
V
V
 
A
G
 
G
I
 
E
G
 
G
G
 
G
Q
 
E
G
 
G
V
 
I
M
 
I
T
 
S
A
 
S
T
 
G
E
 
D
I
 
F
L
 
I
A
 
A
E
 
A
A
 
A
A
 
C
I
 
A
A
 
R
L
 
A
G
 
G
H
 
L
D
 
E
V
 
V
K
 
Y
K
 
T
T
 
F
E
 
K
V
 
T
A
 
F
G
 
P
M
 
A
A
 
E
Q
 
I
R
 
K
G
 
G
G
 
G
V
 
Y
V
 
A
S
 
M
S
 
Y
H
 
Q
L
 
V
R
 
R
F
 
A
G
 
S
P
 
S
K
 
E
V
 
K
L
 
L
S
 
Y
P
 
C
Q
 
Q
I
 
-
T
 
-
P
 
G
G
 
D
T
 
T
A
 
F
H
 
D
V
 
V
L
 
F
L
 
C
G
 
A
F
 
F
E
 
N
A
 
G
A
 
-
E
 
E
A
 
A
M
 
Y
R
 
E
W
 
Q
R
 
N
H
 
K
M
 
D
L
 
K
V
 
I
P
 
K
E
 
P
G
 
G
I
 
T
A
 
A
L
 
F
M
 
-
N
 
-
T
 
-
A
 
-
Q
 
-
L
 
-
T
 
-
P
 
-
P
 
-
V
 
-
V
 
-
D
 
-
L
 
-
G
 
-
L
 
V
Y
 
Y
D
 
D
Y
 
Y
P
 
P
A
 
G
-
 
G
D
 
D
P
 
F
V
 
E
G
 
P
S
 
D
M
 
E
K
 
I
D
 
P
S
 
E
G
 
G
C
 
V
R
 
F
V
 
A
V
 
Y
A
 
P
F
 
I
D
 
P
A
 
M
M
 
S
A
 
Q
I
 
T
A
 
A
K
 
K
D
 
E
L
 
M
G
 
K
D
 
S
I
 
Y
R
 
R
L
 
S
G
 
K
N
 
N
T
 
M
V
 
V
M
 
A
L
 
L
G
 
G
A
 
A
V
 
L
A
 
S
D
 
E
H
 
L
L
 
F
P
 
N
F
 
I
S
 
S
A
 
E
D
 
N
I
 
T
L
 
L
L
 
K
N
 
E
C
 
V
I
 
L
L
 
S
Q
 
D
R
 
K
F
 
F
A
 
G
R
 
K
K
 
K
G
 
G
E
 
E
K
 
E
V
 
V
V
 
L
E
 
A
Q
 
F
N
 
N
R
 
L
K
 
E
A
 
A
F
 
F
A
 
D
A
 
K
G
 
G
R
 
K
A
 
A
A
 
L
V
 
A
A
 
K
A
 
A
T
 
L
A
 
T
E
 
K
A
 
A

Sites not aligning to the query:

Query Sequence

>Dsui_0094 FitnessBrowser__PS:Dsui_0094
MSIATTNILVVGIGGQGVMTATEILAEAAIALGHDVKKTEVAGMAQRGGVVSSHLRFGPK
VLSPQITPGTAHVLLGFEAAEAMRWRHMLVPEGIALMNTAQLTPPVVDLGLYDYPADPVG
SMKDSGCRVVAFDAMAIAKDLGDIRLGNTVMLGAVADHLPFSADILLNCILQRFARKGEK
VVEQNRKAFAAGRAAVAATAEAALA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory