Comparing Dsui_0095 FitnessBrowser__PS:Dsui_0095 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
6n2oC 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
28% identity, 26% coverage: 6:166/621 of query aligns to 193:362/572 of 6n2oC
Sites not aligning to the query:
6n2oA 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
28% identity, 26% coverage: 6:166/621 of query aligns to 193:362/572 of 6n2oA
Sites not aligning to the query:
6n2nA Crystal structure of 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus (see paper)
28% identity, 26% coverage: 6:166/621 of query aligns to 193:362/572 of 6n2nA
>Dsui_0095 FitnessBrowser__PS:Dsui_0095
MAAIAPVPAQSRLLMSGNEAVARAVWEAGVKVAAAYPGTPATEMLEVISTYPDLYAEWSV
NEKVSLEVAVGAAYAGSRSFCCMKHVGMNVASDALMTLTLTGVAGGLVIAVADDVGLSSS
QNEQDSRYWGRFAHLPVLEPADSQEAYEMTKLGYELSERFQVPVILRLTTRICHVKALVT
VGERQEHVGAGFKKEPARWVMTPSGAARRLPLMFEREAALKAEAEVSPLNVIEAGSDRRL
GFITSGPAYMHVKEAFPEAPVLKLGFSCPAPIDKCRELAVLCDEVVVVEEVEPLLETELK
AQGIALHGKDILPRIGELAPPVLKAAIAKLRGEPVPAVTAVAPMQVFPRPPTMCVACPHL
GVYYTLSQVRNITIAGDIGCYTLGAGHPWNALDTCISMGASMGVALGLDKGRGESDKDKR
ILAVIGDSTFLHMGMQGLLDIVYNQGNVTVLLLDNRAVGMTGGQNNPGNGLDIHGNEAPR
VDFVKLVQALGVKPERVHKVNPYELPVLFKAIREEVKVAEPSVIITDQPCVLTEAYHKLK
PFTVMDDKCTGCGNCVEVGCPAIHVTRREKAIKPNGREVDLNFVRIETAACTGCGLCVQP
CAPDAIVHAETVVPINILKKH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory