SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_0095 FitnessBrowser__PS:Dsui_0095 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

6n2oC 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
28% identity, 26% coverage: 6:166/621 of query aligns to 193:362/572 of 6n2oC

query
sites
6n2oC
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A
 
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G
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I
E
 
L
A
 
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G
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L
K
 
E
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F
A
 
F
A
 
S
A
 
A
Y
 
Y
P
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P
G
x
I
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T
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P
A
 
A
T
 
T
E
 
E
M
 
V
L
 
A
E
 
K
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Y
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A
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T
Y
 
H
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L
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K
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A
 
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D
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I
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A
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L
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A
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Y
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A
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-
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C
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Y
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I
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V

Sites not aligning to the query:

6n2oA 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus with 2-oxoglutarate, coenzyme a and succinyl-coa bound (see paper)
28% identity, 26% coverage: 6:166/621 of query aligns to 193:362/572 of 6n2oA

query
sites
6n2oA
P
 
P
V
 
Q
P
 
E
A
 
P
Q
 
K
S
 
D
R
 
V
L
 
I
L
 
I
M
 
M
S
 
A
G
 
G
N
 
N
E
 
D
A
 
A
V
 
V
A
 
G
R
 
L
A
 
G
V
 
G
W
 
I
E
 
L
A
 
G
G
 
G
V
 
L
K
 
E
V
 
F
A
 
F
A
 
S
A
 
A
Y
|
Y
P
|
P
G
x
I
T
|
T
P
 
P
A
 
A
T
 
T
E
 
E
M
 
V
L
 
A
E
 
K
V
 
Y
I
 
V
S
 
A
T
 
T
Y
 
H
-
 
L
P
 
P
D
 
K
L
 
C
Y
 
G
A
 
G
E
 
D
-
 
L
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W
 
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A
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E
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D
E
|
E
K
 
I
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A
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S
L
 
I
E
 
A
V
 
Q
A
 
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V
 
L
G
 
G
A
 
A
A
 
S
Y
 
Y
A
 
A
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G
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K
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G
 
G
M
 
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A
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L
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E
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L
M
 
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M
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A
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H
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E
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T
A
 
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-
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C
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L
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V
I
 
V
A
 
D
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V
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Q
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x
R
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G
A
 
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G
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H
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E
E
 
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D
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A
Y
 
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H
A
 
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Y
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A
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I
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V

Sites not aligning to the query:

6n2nA Crystal structure of 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus (see paper)
28% identity, 26% coverage: 6:166/621 of query aligns to 193:362/572 of 6n2nA

query
sites
6n2nA
P
 
P
V
 
Q
P
 
E
A
 
P
Q
 
K
S
 
D
R
 
V
L
 
I
L
 
I
M
 
M
S
 
A
G
 
G
N
 
N
E
 
D
A
 
A
V
 
V
A
 
G
R
 
L
A
 
G
V
 
G
W
 
I
E
 
L
A
 
G
G
 
G
V
 
L
K
 
E
V
 
F
A
 
F
A
 
S
A
 
A
Y
|
Y
P
|
P
G
x
I
T
 
T
P
 
P
A
 
A
T
 
T
E
 
E
M
 
V
L
 
A
E
 
K
V
 
Y
I
 
V
S
 
A
T
 
T
Y
 
H
-
 
L
P
 
P
D
 
K
L
 
C
Y
 
G
A
 
G
E
 
D
-
 
L
-
 
V
W
 
Q
S
 
A
V
 
E
N
 
D
E
|
E
K
 
I
V
 
A
S
 
S
L
 
I
E
 
A
V
 
Q
A
 
V
V
 
L
G
 
G
A
 
A
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S
Y
 
Y
A
 
A
G
 
G
S
 
K
R
 
K
S
 
S
F
 
M
C
 
T
C
 
A
M
 
T
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S
H
 
G
V
 
P
G
 
G
M
 
L
N
 
A
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L
A
 
M
S
 
S
D
 
E
A
 
M
L
 
L
M
 
G
T
 
M
L
 
A
T
 
H
L
 
M
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S
G
 
E
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T
A
 
P
G
 
-
G
 
C
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L
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V
I
 
V
A
 
D
V
 
V
-
 
Q
-
 
R
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G
A
 
G
D
 
P
D
 
S
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T
G
 
G
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L
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P
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T
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K
Q
 
H
N
 
E
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Q
Q
 
S
D
 
D
-
 
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F
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A
Y
 
I
W
 
H
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G
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G
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H
A
 
G
H
 
D
L
 
S
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P
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I
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K
E
 
D
A
 
C
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I
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S
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M
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V
L
 
D
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G
Y
 
L
E
 
N
L
 
L
S
 
A
E
 
E
R
 
K
F
 
Y
Q
 
Q
V
 
A
P
 
P
V
 
V
I
 
I
L
 
V

Query Sequence

>Dsui_0095 FitnessBrowser__PS:Dsui_0095
MAAIAPVPAQSRLLMSGNEAVARAVWEAGVKVAAAYPGTPATEMLEVISTYPDLYAEWSV
NEKVSLEVAVGAAYAGSRSFCCMKHVGMNVASDALMTLTLTGVAGGLVIAVADDVGLSSS
QNEQDSRYWGRFAHLPVLEPADSQEAYEMTKLGYELSERFQVPVILRLTTRICHVKALVT
VGERQEHVGAGFKKEPARWVMTPSGAARRLPLMFEREAALKAEAEVSPLNVIEAGSDRRL
GFITSGPAYMHVKEAFPEAPVLKLGFSCPAPIDKCRELAVLCDEVVVVEEVEPLLETELK
AQGIALHGKDILPRIGELAPPVLKAAIAKLRGEPVPAVTAVAPMQVFPRPPTMCVACPHL
GVYYTLSQVRNITIAGDIGCYTLGAGHPWNALDTCISMGASMGVALGLDKGRGESDKDKR
ILAVIGDSTFLHMGMQGLLDIVYNQGNVTVLLLDNRAVGMTGGQNNPGNGLDIHGNEAPR
VDFVKLVQALGVKPERVHKVNPYELPVLFKAIREEVKVAEPSVIITDQPCVLTEAYHKLK
PFTVMDDKCTGCGNCVEVGCPAIHVTRREKAIKPNGREVDLNFVRIETAACTGCGLCVQP
CAPDAIVHAETVVPINILKKH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory