SitesBLAST
Comparing Dsui_0516 FitnessBrowser__PS:Dsui_0516 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
Q5LUF3 Propionyl-CoA carboxylase alpha chain; EC 6.4.1.3 from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
59% identity, 100% coverage: 1:663/663 of query aligns to 1:681/681 of Q5LUF3
- F348 (= F349) binding
- W515 (= W498) mutation to L: No effect on holoenzyme formation.
- L599 (= L581) mutation to A: Loss of holoenzyme formation; when associated with A-602 and A-603.
- L602 (= L584) mutation to A: Loss of holoenzyme formation; when associated with A-602 and A-603.
- M603 (= M585) mutation to A: No effect on holoenzyme formation. Loss of holoenzyme formation; when associated with A-602 and A-603.
- K647 (= K629) modified: N6-biotinyllysine
3n6rG Crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) (see paper)
58% identity, 100% coverage: 2:663/663 of query aligns to 1:646/646 of 3n6rG
- active site: K115 (= K116), K157 (= K158), D180 (= D195), H193 (= H208), R219 (= R234), T258 (= T273), E260 (= E275), E273 (= E289), N275 (= N291), R277 (= R293), E281 (= E297), R323 (= R339), G519 (= G536)
- binding 5-(hexahydro-2-oxo-1h-thieno[3,4-d]imidazol-6-yl)pentanal: M611 (= M628), K612 (= K629)
7ybuA Human propionyl-coenzyme a carboxylase
51% identity, 100% coverage: 2:663/663 of query aligns to 5:670/670 of 7ybuA
P05165 Propionyl-CoA carboxylase alpha chain, mitochondrial; PCCase subunit alpha; Propanoyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.3 from Homo sapiens (Human) (see 6 papers)
51% identity, 100% coverage: 2:663/663 of query aligns to 63:728/728 of P05165
- A75 (= A14) to P: in PA-1; dbSNP:rs794727479
- R77 (= R16) to W: in PA-1; loss of function; dbSNP:rs141371306
- A138 (= A77) to T: in PA-1; loss of function; dbSNP:rs202247814
- I164 (= I103) to T: in PA-1; loss of function; dbSNP:rs202247815
- G197 (≠ D136) to E: in PA-1
- M229 (≠ L168) to K: in PA-1; dbSNP:rs375628794
- Q297 (= Q236) to R: in PA-1
- D368 (= D308) to G: in PA-1
- M373 (= M313) to K: in PA-1; unstable protein; loss of function; dbSNP:rs121964958
- G379 (= G319) to V: in PA-1; dbSNP:rs794727087
- C398 (= C338) to R: in PA-1
- R399 (= R339) to Q: in PA-1; dbSNP:rs1301904623
- P423 (= P362) to L: in PA-1; dbSNP:rs1443858896
- L532 (≠ V472) natural variant: Missing (in PA-1)
- V551 (≠ G489) to F: in dbSNP:rs61749895
- W559 (vs. gap) to L: in PA-1; dbSNP:rs118169528
- G631 (= G566) to R: in PA-1; loss of function; dbSNP:rs796052018
- G668 (= G603) to R: in PA-1; loss of biotinylation; dbSNP:rs771438170
- K694 (= K629) modified: N6-biotinyllysine; by HLCS
- C712 (≠ V647) natural variant: Missing (in PA-1; loss of biotinylation)
Sites not aligning to the query:
- 1:52 modified: transit peptide, Mitochondrion
8sgxX Leishmania tarentolae propionyl-coa carboxylase (alpha-4-beta-6) (see paper)
48% identity, 99% coverage: 5:663/663 of query aligns to 1:657/657 of 8sgxX
3n6rA Crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc) (see paper)
56% identity, 70% coverage: 203:663/663 of query aligns to 133:591/591 of 3n6rA
- active site: H138 (= H208), R164 (= R234), T203 (= T273), E205 (= E275), E218 (= E289), N220 (= N291), R222 (= R293), E226 (= E297), R268 (= R339), G464 (= G536)
- binding 5-(hexahydro-2-oxo-1h-thieno[3,4-d]imidazol-6-yl)pentanal: M556 (= M628), K557 (= K629)
Sites not aligning to the query:
P9WPQ3 Biotin-dependent 3-methylcrotonyl-coenzyme A carboxylase alpha1 subunit; EC 6.3.4.14 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
41% identity, 99% coverage: 1:659/663 of query aligns to 1:649/654 of P9WPQ3
- K322 (= K321) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)
2vpqB Crystal structure of biotin carboxylase from s. Aureus complexed with amppnp (see paper)
51% identity, 67% coverage: 3:444/663 of query aligns to 1:440/448 of 2vpqB
- active site: V116 (≠ E118), K156 (= K158), H206 (= H208), R232 (= R234), T271 (= T273), E273 (= E275), E287 (= E289), N289 (= N291), R291 (= R293), E295 (= E297), R337 (= R339)
- binding phosphoaminophosphonic acid-adenylate ester: K114 (= K116), I154 (≠ M156), K156 (= K158), G161 (= G163), G163 (= G165), I166 (≠ L168), F200 (≠ Y202), I201 (≠ V203), E273 (= E275), I275 (≠ V277), M286 (≠ L288), E287 (= E289)
- binding magnesium ion: E273 (= E275), E287 (= E289)
2vr1A Crystal structure of biotin carboxylase from e. Coli in complex with atp analog, adpcf2p. (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:441/444 of 2vr1A
- active site: K116 (= K116), K159 (= K158), D194 (= D195), H207 (= H208), R233 (= R234), T272 (= T273), E274 (= E275), E286 (= E289), N288 (= N291), R290 (= R293), E294 (= E297), R336 (= R339)
- binding phosphodifluoromethylphosphonic acid-adenylate ester: K159 (= K158), R165 (≠ K166), M167 (≠ L168), Y201 (= Y202), L202 (≠ V203), E274 (= E275), L276 (≠ V277), E286 (= E289), N288 (= N291), I435 (≠ T441)
4mv4A Crystal structure of biotin carboxylase from haemophilus influenzae in complex with amppcp and mg2 (see paper)
49% identity, 67% coverage: 1:447/663 of query aligns to 1:440/442 of 4mv4A
- active site: K116 (= K116), K159 (= K158), D193 (= D195), H206 (= H208), R232 (= R234), T271 (= T273), E273 (= E275), E285 (= E289), N287 (= N291), R289 (= R293), E293 (= E297), R335 (= R339)
- binding phosphomethylphosphonic acid adenylate ester: K159 (= K158), G164 (= G163), M166 (≠ L168), E198 (= E200), Y200 (= Y202), L201 (≠ V203), H233 (= H235), L275 (≠ V277), E285 (= E289)
- binding magnesium ion: E273 (= E275), E285 (= E289)
6oi8A Crystal structure of haemophilus influenzae biotin carboxylase complexed with 7-((1r,5s,6s)-6-amino-3-azabicyclo[3.1.0]hexan-3-yl)- 6-(2-chloro-6-(pyridin-3-yl)phenyl)pyrido[2,3-d]pyrimidin-2-amine (see paper)
48% identity, 67% coverage: 1:447/663 of query aligns to 1:438/440 of 6oi8A
- active site: K116 (= K116), K159 (= K158), D191 (= D195), H204 (= H208), R230 (= R234), T269 (= T273), E271 (= E275), E283 (= E289), N285 (= N291), R287 (= R293), E291 (= E297), R333 (= R339)
- binding 7-[(1R,5S,6s)-6-amino-3-azabicyclo[3.1.0]hexan-3-yl]-6-[2-chloro-6-(pyridin-3-yl)phenyl]pyrido[2,3-d]pyrimidin-2-amine: I157 (≠ M156), K159 (= K158), M164 (≠ L168), E196 (= E200), Y198 (= Y202), L199 (≠ V203), H204 (= H208), Q228 (= Q232), E271 (= E275), L273 (≠ V277), E283 (= E289), I432 (≠ T441)
4mv3A Crystal structure of biotin carboxylase from haemophilus influenzae in complex with amppcp and bicarbonate (see paper)
48% identity, 67% coverage: 1:447/663 of query aligns to 1:437/439 of 4mv3A
- active site: K116 (= K116), K159 (= K158), D190 (= D195), H203 (= H208), R229 (= R234), T268 (= T273), E270 (= E275), E282 (= E289), N284 (= N291), R286 (= R293), E290 (= E297), R332 (= R339)
- binding phosphomethylphosphonic acid adenylate ester: K159 (= K158), M163 (≠ L168), E195 (= E200), Y197 (= Y202), L198 (≠ V203), E270 (= E275), L272 (≠ V277), E282 (= E289)
- binding bicarbonate ion: R286 (= R293), Q288 (= Q295), V289 (= V296)
P24182 Biotin carboxylase; Acetyl-coenzyme A carboxylase biotin carboxylase subunit A; EC 6.3.4.14 from Escherichia coli (strain K12) (see 3 papers)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:443/449 of P24182
- R19 (≠ K19) mutation to E: Loss of homodimerization. No effect on ATP binding.
- E23 (≠ K23) mutation to R: Loss of homodimerization. No effect on ATP binding.
- K116 (= K116) binding
- K159 (= K158) binding
- GG 165:166 (= GG 164:165) binding
- EKYL 201:204 (≠ EKYV 200:203) binding
- H209 (= H208) binding
- H236 (= H235) binding
- K238 (= K237) binding
- E276 (= E275) binding ; binding
- E288 (= E289) binding ; binding
- R292 (= R293) active site; binding
- V295 (= V296) binding
- E296 (= E297) mutation to A: Severe reduction in catalytic activity.
- R338 (= R339) binding ; binding ; mutation to A: Severe reduction in catalytic activity.
- F363 (≠ V365) mutation to A: Loss of homodimerization. No effect on ATP binding.
- R366 (= R370) mutation to E: Loss of homodimerization. No effect on ATP binding.
3jzfB Crystal structure of biotin carboxylase from e. Coli in complex with benzimidazoles series (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 3:445/447 of 3jzfB
- active site: K118 (= K116), K161 (= K158), D198 (= D195), H211 (= H208), R237 (= R234), T276 (= T273), E278 (= E275), E290 (= E289), N292 (= N291), R294 (= R293), E298 (= E297), R340 (= R339)
- binding 2-[(2-chlorobenzyl)amino]-1-(cyclohexylmethyl)-1H-benzimidazole-5-carboxamide: K118 (= K116), K161 (= K158), A162 (= A159), G166 (= G163), G168 (= G165), R169 (≠ K166), G170 (= G167), M171 (≠ L168), Y201 (≠ F198), E203 (= E200), K204 (= K201), Y205 (= Y202), H211 (= H208), H238 (= H235), L280 (≠ V277), I289 (≠ L288), E290 (= E289)
3rupA Crystal structure of e.Coli biotin carboxylase in complex with two adp and two ca ions (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:443/444 of 3rupA
- active site: K116 (= K116), K159 (= K158), D196 (= D195), H209 (= H208), R235 (= R234), T274 (= T273), E276 (= E275), E288 (= E289), N290 (= N291), R292 (= R293), E296 (= E297), R338 (= R339)
- binding adenosine-5'-diphosphate: Y82 (= Y82), G83 (= G83), K116 (= K116), K159 (= K158), G164 (= G163), G164 (= G163), G165 (= G164), G166 (= G165), R167 (≠ K166), M169 (≠ L168), F193 (= F192), E201 (= E200), K202 (= K201), Y203 (= Y202), L204 (≠ V203), H209 (= H208), Q233 (= Q232), H236 (= H235), K238 (= K237), L278 (≠ V277), E288 (= E289), R292 (= R293), V295 (= V296), E296 (= E297), R338 (= R339), D382 (= D386), I437 (≠ T441)
- binding calcium ion: E87 (= E87), E276 (= E275), E288 (= E289), E288 (= E289), N290 (= N291)
3g8cA Crystal structure of biotin carboxylase in complex with biotin, bicarbonate, adp and mg ion (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:443/444 of 3g8cA
- active site: K116 (= K116), K159 (= K158), D196 (= D195), H209 (= H208), R235 (= R234), T274 (= T273), E276 (= E275), E288 (= E289), N290 (= N291), R292 (= R293), E296 (= E297), R338 (= R339)
- binding adenosine-5'-diphosphate: I157 (≠ M156), K159 (= K158), G164 (= G163), M169 (≠ L168), E201 (= E200), K202 (= K201), Y203 (= Y202), L204 (≠ V203), Q233 (= Q232), H236 (= H235), L278 (≠ V277), E288 (= E289), I437 (≠ T441)
- binding bicarbonate ion: K238 (= K237), R292 (= R293), Q294 (= Q295), V295 (= V296), E296 (= E297)
- binding biotin: Y82 (= Y82), F84 (= F84), R292 (= R293), V295 (= V296), R338 (= R339), D382 (= D386)
- binding magnesium ion: E276 (= E275), E288 (= E289)
3jziA Crystal structure of biotin carboxylase from e. Coli in complex with benzimidazole series (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:443/445 of 3jziA
- active site: K116 (= K116), K159 (= K158), D196 (= D195), H209 (= H208), R235 (= R234), T274 (= T273), E276 (= E275), E288 (= E289), N290 (= N291), R292 (= R293), E296 (= E297), R338 (= R339)
- binding 7-amino-2-[(2-chlorobenzyl)amino]-1-{[(1S,2S)-2-hydroxycycloheptyl]methyl}-1H-benzimidazole-5-carboxamide: K116 (= K116), K159 (= K158), A160 (= A159), G164 (= G163), G165 (= G164), M169 (≠ L168), Y199 (≠ F198), E201 (= E200), K202 (= K201), Y203 (= Y202), H209 (= H208), Q233 (= Q232), H236 (= H235), L278 (≠ V277), I287 (≠ L288), E288 (= E289)
2w6oA Crystal structure of biotin carboxylase from e. Coli in complex with 4-amino-7,7-dimethyl-7,8-dihydro-quinazolinone fragment (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:443/445 of 2w6oA
- active site: K116 (= K116), K159 (= K158), D196 (= D195), H209 (= H208), R235 (= R234), T274 (= T273), E276 (= E275), E288 (= E289), N290 (= N291), R292 (= R293), E296 (= E297), R338 (= R339)
- binding 4-amino-7,7-dimethyl-7,8-dihydroquinazolin-5(6H)-one: K159 (= K158), K202 (= K201), Y203 (= Y202), L204 (≠ V203), L278 (≠ V277), I437 (≠ T441)
2w6nA Crystal structure of biotin carboxylase from e. Coli in complex with amino-oxazole fragment series (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:443/445 of 2w6nA
- active site: K116 (= K116), K159 (= K158), D196 (= D195), H209 (= H208), R235 (= R234), T274 (= T273), E276 (= E275), E288 (= E289), N290 (= N291), R292 (= R293), E296 (= E297), R338 (= R339)
- binding 2-amino-n,n-bis(phenylmethyl)-1,3-oxazole-5-carboxamide: I157 (≠ M156), K159 (= K158), M169 (≠ L168), E201 (= E200), K202 (= K201), Y203 (= Y202), L278 (≠ V277)
2v59A Crystal structure of biotin carboxylase from e.Coli in complex with potent inhibitor 2 (see paper)
50% identity, 67% coverage: 1:447/663 of query aligns to 1:443/445 of 2v59A
- active site: K116 (= K116), K159 (= K158), D196 (= D195), H209 (= H208), R235 (= R234), T274 (= T273), E276 (= E275), E288 (= E289), N290 (= N291), R292 (= R293), E296 (= E297), R338 (= R339)
- binding 6-(2,6-dimethoxyphenyl)pyrido[2,3-d]pyrimidine-2,7-diamine: K159 (= K158), Y203 (= Y202), L204 (≠ V203), H209 (= H208), Q233 (= Q232), H236 (= H235), L278 (≠ V277), I437 (≠ T441)
Query Sequence
>Dsui_0516 FitnessBrowser__PS:Dsui_0516
MFKKILIANRGEIACRVIKTARKMGIKTVAVYSEADKDALFVEMADEAVCIGPAASKESY
LVADKIIAACKQTGAEAVHPGYGFLSENAEFSRRLEEEGIKFIGPKHYSIAKMGDKIESK
KLAIEAKVNTIPGYNDAIDGPDAAVEIAKKIGYPVMIKASAGGGGKGLRVAYNDAEAHEG
FSSCVNEARNSFGDDRVFIEKYVLEPRHIEIQVLGDSHGNYVYLNERDCSIQRRHQKVIE
EAPSPFVDPEMRKAMGEQAVALARAVNYESAGTVEFVVSGATKEFYFLEMNTRLQVEHPV
TELITGLDLVEQMIRVAYGEKLPLTQADVQINGWAMECRINAEDPFRGFLPSTGRLVKFQ
PPAEVDGQVRVDTGVYDGGEISMYYDSMIAKLIVHGASREQAIARMRDALNGFVIRGISS
NIPFQAALMQHARFQSGIFDTGFIAKEYPKGFDASMVPHDDPALLIGVAAFVHRRYIDRA
AQVSGQLPGHERKVGDEWVVIRNGERHPVVAKPIEGGYLVTYNGEKYELLSDWRQGQSLF
NGTCNGEEFTLQVERHRMTYQLFHWGTRADMMVMSARAAELLALMPEKAAPDLSKFLLSP
MPGLLREVSVAVGQEVKAGEKLAVIEAMKMENILKAEQDCKVKKISVTAGSSLSVDEIII
EFE
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory