SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_1419 FitnessBrowser__PS:Dsui_1419 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
45% identity, 68% coverage: 19:110/135 of query aligns to 14:104/200 of 6j2lA

query
sites
6j2lA
A
 
T
D
 
D
G
 
G
T
 
L
I
 
M
P
 
P
V
 
V
I
 
I
A
 
V
Q
 
Q
D
 
H
A
 
A
A
 
V
S
 
S
G
 
G
R
 
E
V
 
V
I
 
L
M
 
M
F
 
L
A
 
G
Y
 
Y
A
 
M
N
 
N
R
 
P
E
 
E
T
 
A
L
 
L
A
 
D
E
 
K
T
 
T
A
 
I
R
 
E
T
 
S
G
 
G
R
 
K
A
 
V
T
 
T
Y
 
F
W
 
F
S
 
S
R
 
R
S
 
T
R
 
K
N
 
Q
K
 
R
V
 
L
W
 
W
R
 
I
K
 
K
G
 
G
E
 
E
E
 
T
S
 
S
G
 
G
H
 
N
F
 
F
Q
 
L
H
 
N
V
 
V
K
 
V
E
 
S
M
 
I
R
 
A
A
 
P
D
|
D
C
 
C
D
|
D
G
 
N
D
|
D
V
 
-
V
 
T
L
 
L
L
 
L
S
 
V
V
 
L
E
 
A
Q
 
N
E
 
P
G
 
I
G
 
G
I
 
P
A
 
T
C
|
C
H
 
H
T
 
K
G
 
G
R
 
T
E
 
S
S
 
S
C
|
C
F
 
F

Sites not aligning to the query:

7bgnA Crystal structure of mthisn2-amp complex, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
39% identity, 76% coverage: 10:111/135 of query aligns to 4:104/204 of 7bgnA

query
sites
7bgnA
S
 
S
W
 
L
L
 
L
D
 
D
A
 
S
L
 
V
K
 
K
F
 
W
G
 
D
A
 
N
D
 
K
G
 
G
T
 
L
I
 
A
P
 
V
V
 
A
I
 
I
A
 
A
Q
 
Q
D
 
N
A
 
V
A
 
D
S
 
T
G
 
G
R
 
A
V
 
I
I
 
L
M
 
M
F
 
Q
A
 
G
Y
 
F
A
 
A
N
 
N
R
 
R
E
 
E
T
 
A
L
 
V
A
 
A
E
 
T
T
 
T
A
 
I
R
 
S
T
 
S
G
 
R
R
 
K
A
 
A
T
 
T
Y
 
F
W
 
Y
S
 
S
R
 
R
S
 
S
R
 
R
N
 
S
K
 
S
V
 
L
W
|
W
R
 
T
K
|
K
G
|
G
E
 
E
E
x
T
S
|
S
G
 
N
H
 
N
F
 
F
Q
 
I
H
 
N
V
 
V
K
 
H
E
 
D
M
 
V
R
 
F
A
 
L
D
|
D
C
 
C
D
|
D
G
 
R
D
|
D
V
 
S
V
 
I
L
 
I
L
 
Y
S
 
-
V
 
L
E
 
G
Q
 
K
E
 
P
G
 
D
G
 
G
I
 
P
A
x
T
C
|
C
H
|
H
T
 
T
G
 
G
R
 
A
E
 
E
S
 
T
C
|
C
F
 
Y
F
 
Y

Sites not aligning to the query:

7bgmA Crystal structure of mthisn2, a bifunctional enzyme from the histidine biosynthetic pathway (see paper)
39% identity, 76% coverage: 10:111/135 of query aligns to 6:106/213 of 7bgmA

query
sites
7bgmA
S
 
S
W
 
L
L
 
L
D
 
D
A
 
S
L
 
V
K
 
K
F
 
W
G
 
D
A
 
N
D
 
K
G
 
G
T
 
L
I
 
A
P
 
V
V
 
A
I
 
I
A
 
A
Q
 
Q
D
 
N
A
 
V
A
 
D
S
 
T
G
 
G
R
 
A
V
 
I
I
 
L
M
 
M
F
 
Q
A
 
G
Y
 
F
A
 
A
N
 
N
R
 
R
E
 
E
T
 
A
L
 
V
A
 
A
E
 
T
T
 
T
A
 
I
R
 
S
T
 
S
G
 
R
R
 
K
A
 
A
T
 
T
Y
 
F
W
 
Y
S
 
S
R
 
R
S
 
S
R
 
R
N
 
S
K
 
S
V
 
L
W
 
W
R
 
T
K
 
K
G
 
G
E
 
E
E
 
T
S
 
S
G
 
N
H
 
N
F
 
F
Q
 
I
H
 
N
V
 
V
K
 
H
E
 
D
M
 
V
R
 
F
A
 
L
D
|
D
C
 
C
D
|
D
G
 
R
D
|
D
V
 
S
V
 
I
L
 
I
L
 
Y
S
 
-
V
 
L
E
 
G
Q
 
K
E
 
P
G
 
D
G
 
G
I
 
P
A
 
T
C
|
C
H
 
H
T
 
T
G
 
G
R
 
A
E
 
E
S
 
T
C
|
C
F
 
Y
F
 
Y

Sites not aligning to the query:

6j2lB Crystal structure of bi-functional enzyme (see paper)
39% identity, 72% coverage: 19:115/135 of query aligns to 13:111/185 of 6j2lB

query
sites
6j2lB
A
 
T
D
 
D
G
 
G
T
 
L
I
 
M
P
 
P
V
 
V
I
 
I
A
 
V
Q
 
Q
D
 
H
A
 
A
A
 
V
S
 
S
G
 
G
R
 
E
V
 
V
I
 
L
M
 
M
F
 
L
A
 
G
Y
 
Y
A
 
M
N
 
N
R
 
P
E
 
E
T
 
A
L
 
L
A
 
D
E
 
K
T
 
T
A
 
I
R
 
E
T
 
S
G
 
G
R
 
K
A
 
V
T
 
T
Y
 
F
W
 
F
S
 
S
R
 
R
S
 
T
R
 
K
N
 
Q
K
 
R
V
 
L
W
 
W
R
 
I
K
 
K
G
 
G
E
 
E
E
 
T
S
 
S
G
 
G
H
 
N
F
 
F
Q
 
L
H
 
N
V
 
V
K
 
V
E
 
S
M
 
I
R
 
A
A
 
P
D
|
D
C
 
C
D
|
D
G
 
N
D
|
D
V
 
T
V
 
L
L
 
L
L
 
V
S
 
L
V
 
A
E
 
N
Q
 
P
E
 
I
G
 
G
G
 
P
I
 
S
A
 
S
C
 
C
-
 
F
-
 
G
H
 
N
T
 
T
G
 
A
R
 
H
E
 
Q
S
 
W
C
 
L
F
 
F
F
 
L
Y
 
Y
R
 
Q
R
 
L
E
 
E

Sites not aligning to the query:

Query Sequence

>Dsui_1419 FitnessBrowser__PS:Dsui_1419
MSHDLDPSLSWLDALKFGADGTIPVIAQDAASGRVIMFAYANRETLAETARTGRATYWSR
SRNKVWRKGEESGHFQHVKEMRADCDGDVVLLSVEQEGGIACHTGRESCFFYRREGDRWI
PADPVLKDPKEIYAK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory