SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_1420 FitnessBrowser__PS:Dsui_1420 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
42% identity, 62% coverage: 6:71/107 of query aligns to 113:178/200 of 6j2lA

query
sites
6j2lA
I
 
F
L
 
L
H
 
Y
R
 
Q
L
 
L
S
 
E
D
 
Q
T
 
L
L
 
L
A
 
A
S
 
E
R
 
R
R
 
K
N
 
Y
A
 
A
D
 
D
P
 
P
E
 
E
T
 
T
S
 
S
Y
 
Y
T
 
T
A
 
A
Q
 
K
L
 
L
F
 
Y
S
 
A
K
 
S
G
 
G
P
 
T
D
 
K
S
 
R
I
 
I
L
 
A
K
 
Q
K
 
K
I
 
V
G
 
G
E
 
E
E
|
E
C
 
G
A
 
V
E
 
E
L
 
T
I
 
A
M
 
L
A
 
A
G
 
A
K
 
T
E
 
V
G
 
H
K
 
D
R
 
R
L
 
F
N
 
E
I
 
L
V
 
T
W
 
N
E
|
E
S
 
A
T
 
S
D
|
D
V
 
L
I
 
M
Y
 
Y
H
 
H

Sites not aligning to the query:

Query Sequence

>Dsui_1420 FitnessBrowser__PS:Dsui_1420
MSTHDILHRLSDTLASRRNADPETSYTAQLFSKGPDSILKKIGEECAELIMAGKEGKRLN
IVWESTDVIYHILVLLAFYGLSIEDVSQEMRRREGISGIDEKASRTK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory