SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_1826 FitnessBrowser__PS:Dsui_1826 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

5bokA Ferredoxin component of 3-nitrotoluene dioxygenase from diaphorobacter sp. Strain ds2
27% identity, 98% coverage: 2:101/102 of query aligns to 1:100/102 of 5bokA

query
sites
5bokA
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P0A185 Naphthalene 1,2-dioxygenase system, ferredoxin component from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 2 papers)
29% identity, 96% coverage: 3:100/102 of query aligns to 4:101/104 of P0A185

query
sites
P0A185
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I

Sites not aligning to the query:

1sjgA Solution structure of t4moc, the rieske ferredoxin component of the toluene 4-monooxygenase complex (see paper)
25% identity, 98% coverage: 3:102/102 of query aligns to 2:102/112 of 1sjgA

query
sites
1sjgA
Q
 
S
W
 
F
K
 
E
N
 
K
L
 
I
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C
A
 
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L
E
 
D
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D
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I
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W
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E
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D
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G
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A
 
L
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E
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Q
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E
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I
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L
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S
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E
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T

Q00458 Toluene-4-monooxygenase system, ferredoxin component; T4MO; Toluene-4-monooxygenase system protein C; T4moC from Pseudomonas mendocina (see 4 papers)
25% identity, 98% coverage: 3:102/102 of query aligns to 2:102/112 of Q00458

query
sites
Q00458
Q
 
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F
K
 
E
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I
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Q
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E
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E
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T

2qpzA Naphthalene 1,2-dioxygenase rieske ferredoxin (see paper)
29% identity, 96% coverage: 3:100/102 of query aligns to 3:100/103 of 2qpzA

query
sites
2qpzA
Q
 
K
W
 
W
K
 
I
N
 
E
L
 
A
C
 
V
A
 
A
L
 
L
E
 
S
D
 
D
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I
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L
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E
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L
 
L
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T
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E
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L
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E
A
 
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I

Q8GI16 Ferredoxin CarAc; Carbazole 1,9a-dioxygenase, ferredoxin component; CARDO from Pseudomonas resinovorans (see 2 papers)
32% identity, 98% coverage: 1:100/102 of query aligns to 1:102/107 of Q8GI16

query
sites
Q8GI16
M
 
M
S
 
N
Q
 
Q
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I
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W
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L
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K
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C
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P
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L
 
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R
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R
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F
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E
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L
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F
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4nbbE Carbazole- and oxygen-bound oxygenase with ile262 replaced by val and ferredoxin complex of carbazole 1,9a-dioxygenase (see paper)
31% identity, 95% coverage: 4:100/102 of query aligns to 4:101/114 of 4nbbE

query
sites
4nbbE
W
 
W
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L
N
 
K
L
 
V
C
 
C
A
 
A
L
 
A
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S
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D
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M
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Q
P
 
P
L
 
G
L
 
T
G
 
I
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R
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R
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V
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N
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H
 
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G
G
 
A
G
 
A
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P
I
 
L
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A
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V
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Y
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D
 
-
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G
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D
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Q
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F
F
 
Y
A
 
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H
 
E
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D
K
 
T
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T
H
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x
G
G
 
I
G
 
A
P
 
S
L
 
L
S
 
S
Q
 
E
G
 
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L
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D
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G
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D
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V
V
 
I
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E
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P
L
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F
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G
W
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G
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F
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V
A
 
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S
 
T
G
 
G
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M
E
 
P
A
 
A
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S
A
 
S
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P
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C
Q
 
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G
 
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P
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L
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V

1vm9A The x-ray structure of the cys84ala cys85ala double mutant of the [2fe-2s] ferredoxin subunit of toluene-4-monooxygenase from pseudomonas mendocina kr1 (see paper)
24% identity, 98% coverage: 3:102/102 of query aligns to 1:101/109 of 1vm9A

query
sites
1vm9A
Q
 
S
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F
K
 
E
N
 
K
L
 
I
C
 
C
A
 
S
L
 
L
E
 
D
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D
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I
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V
L
 
G
G
 
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E
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F
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E
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S
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G
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E
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A
 
L
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I
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E
G
 
E
D
 
H
A
 
G
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V
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K
A
 
A
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Q
D
 
A
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M
C
|
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P
H
|
H
K
x
Q
G
 
E
G
 
I
P
 
L
L
 
L
S
 
S
Q
 
E
G
 
G
I
 
S
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Y
H
 
E
G
 
G
Q
 
G
R
 
V
V
 
I
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T
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R
L
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A
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|
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L
W
|
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N
 
T
I
 
F
E
 
N
L
 
D
A
 
G
S
 
T
G
 
G
E
 
H
A
 
G
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I
A
 
N
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P
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D
Q
 
D
G
 
A
C
 
A
T
 
L
A
 
A
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E
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Y
Q
 
P
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V
K
 
E
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V
E
 
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G
G
x
D
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x
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I
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V
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S
A
 
T

6ickA Pseudomonas putida cbb5 ndma (see paper)
29% identity, 66% coverage: 35:101/102 of query aligns to 46:120/330 of 6ickA

query
sites
6ickA
G
 
G
D
 
D
A
 
E
V
 
Y
F
 
V
A
 
A
L
 
M
H
 
R
D
 
D
K
 
R
C
|
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A
H
|
H
K
x
R
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S
G
 
A
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K
L
 
L
S
 
S
Q
 
L
G
 
G
I
 
T
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V
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S
G
 
G
Q
 
N
R
 
R
V
 
L
T
 
Q
C
|
C
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P
L
x
Y
H
|
H
S
 
G
W
|
W
N
 
Q
I
 
Y
E
 
D
L
 
T
-
 
H
-
 
G
-
 
A
-
 
C
-
 
Q
-
 
L
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V
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P
A
 
A
S
 
C
G
 
P
E
 
N
A
 
S
V
 
P
A
 
I
P
 
P
D
 
N
Q
 
K
G
 
A
C
 
K
T
 
V
A
 
D
R
 
R
F
 
F
Q
 
D
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C
K
 
E
V
 
E
E
 
R
D
 
Y
G
 
G
R
 
L
V
 
I
W
 
W
L
 
I
Q
 
R

Sites not aligning to the query:

6icqA Pseudomonas putida cbb5 ndma ql mutant with theobromine (see paper)
29% identity, 66% coverage: 35:101/102 of query aligns to 46:120/334 of 6icqA

query
sites
6icqA
G
 
G
D
 
D
A
 
E
V
 
Y
F
 
V
A
 
A
L
 
M
H
 
R
D
 
D
K
 
R
C
|
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P
 
A
H
|
H
K
x
R
G
 
S
G
 
A
P
 
K
L
 
L
S
 
S
Q
 
L
G
 
G
I
 
T
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V
H
 
S
G
 
G
Q
 
N
R
 
R
V
 
L
T
 
Q
C
|
C
P
 
P
L
x
Y
H
|
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G
W
|
W
N
 
Q
I
 
Y
E
 
D
L
 
T
-
 
H
-
 
G
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A
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C
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Q
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L
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P
A
 
A
S
 
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G
 
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E
 
N
A
 
S
V
 
P
A
 
I
P
 
P
D
 
N
Q
 
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G
 
A
C
 
K
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V
A
 
D
R
 
R
F
 
F
Q
 
D
V
 
C
K
 
E
V
 
E
E
 
R
D
 
Y
G
 
G
R
 
L
V
 
I
W
 
W
L
 
I
Q
 
R

Sites not aligning to the query:

6icoA Pseudomonas putida cbb5 ndma with theophylline (see paper)
29% identity, 66% coverage: 35:101/102 of query aligns to 46:120/344 of 6icoA

query
sites
6icoA
G
 
G
D
 
D
A
 
E
V
 
Y
F
 
V
A
 
A
L
 
M
H
 
R
D
 
D
K
 
R
C
|
C
P
 
A
H
|
H
K
x
R
G
 
S
G
 
A
P
 
K
L
 
L
S
 
S
Q
 
L
G
 
G
I
 
T
V
 
V
H
 
S
G
 
G
Q
 
N
R
 
R
V
 
L
T
 
Q
C
|
C
P
 
P
L
x
Y
H
|
H
S
 
G
W
|
W
N
 
Q
I
 
Y
E
 
D
L
 
T
-
 
H
-
 
G
-
 
A
-
 
C
-
 
Q
-
 
L
-
 
V
-
 
P
A
 
A
S
 
C
G
 
P
E
 
N
A
 
S
V
 
P
A
 
I
P
 
P
D
 
N
Q
 
K
G
 
A
C
 
K
T
 
V
A
 
D
R
 
R
F
 
F
Q
 
D
V
 
C
K
 
E
V
 
E
E
 
R
D
 
Y
G
 
G
R
 
L
V
 
I
W
 
W
L
 
I
Q
 
R

Sites not aligning to the query:

6icnA Pseudomonas putida cbb5 ndma with caffeine (see paper)
29% identity, 66% coverage: 35:101/102 of query aligns to 46:120/344 of 6icnA

query
sites
6icnA
G
 
G
D
 
D
A
 
E
V
 
Y
F
 
V
A
 
A
L
 
M
H
 
R
D
 
D
K
 
R
C
|
C
P
 
A
H
|
H
K
x
R
G
 
S
G
 
A
P
 
K
L
 
L
S
 
S
Q
 
L
G
 
G
I
 
T
V
 
V
H
 
S
G
 
G
Q
 
N
R
 
R
V
 
L
T
 
Q
C
|
C
P
 
P
L
x
Y
H
|
H
S
 
G
W
|
W
N
 
Q
I
 
Y
E
 
D
L
 
T
-
 
H
-
 
G
-
 
A
-
 
C
-
 
Q
-
 
L
-
 
V
-
 
P
A
 
A
S
 
C
G
 
P
E
 
N
A
 
S
V
 
P
A
 
I
P
 
P
D
 
N
Q
 
K
G
 
A
C
 
K
T
 
V
A
 
D
R
 
R
F
 
F
Q
 
D
V
 
C
K
 
E
V
 
E
E
 
R
D
 
Y
G
 
G
R
 
L
V
 
I
W
 
W
L
 
I
Q
 
R

Sites not aligning to the query:

1fqtA Crystal structure of the rieske-type ferredoxin associated with biphenyl dioxygenase (see paper)
29% identity, 97% coverage: 3:101/102 of query aligns to 2:101/109 of 1fqtA

query
sites
1fqtA
Q
 
K
W
 
F
K
 
T
N
 
R
L
 
V
C
 
C
A
 
D
L
 
R
E
 
R
D
 
D
I
 
V
P
 
P
L
 
E
L
 
G
G
 
E
S
 
A
R
 
L
V
 
K
V
 
V
Q
 
E
H
 
S
P
 
G
G
 
G
G
 
T
D
 
S
I
 
V
A
 
A
V
 
I
F
 
F
R
 
N
T
 
V
D
 
D
G
 
G
D
 
E
A
 
-
V
 
L
F
 
F
A
 
A
L
 
T
H
 
Q
D
 
D
K
 
R
C
|
C
P
 
T
H
|
H
K
x
G
G
 
D
G
 
W
P
 
S
L
 
L
S
 
S
Q
 
D
-
 
G
G
 
G
I
 
Y
V
 
L
H
 
E
G
 
G
Q
 
D
R
 
V
V
 
V
T
 
E
C
|
C
P
 
S
L
 
L
H
|
H
S
 
M
W
x
G
N
 
K
I
 
F
E
 
C
L
 
V
A
 
R
S
 
T
G
 
G
E
 
K
A
 
V
V
 
K
A
 
S
P
 
P
D
 
P
Q
x
P
G
 
-
C
 
C
T
 
E
A
 
A
R
 
L
-
 
K
-
 
I
F
 
F
Q
 
P
V
 
I
K
 
R
V
 
I
E
 
E
D
 
D
G
 
N
R
 
D
V
 
V
W
 
L
L
 
V
Q
 
D

2i7fA Sphingomonas yanoikuyae b1 ferredoxin (see paper)
33% identity, 79% coverage: 20:100/102 of query aligns to 19:99/102 of 2i7fA

query
sites
2i7fA
V
 
V
V
 
Y
Q
 
Q
H
 
E
P
 
K
G
 
M
G
 
P
D
 
A
I
 
L
A
 
A
V
 
V
F
 
Y
R
 
N
T
 
V
D
 
D
G
 
G
D
 
E
A
 
-
V
 
V
F
 
F
A
 
V
L
 
T
H
 
D
D
 
N
K
 
L
C
|
C
P
 
T
H
|
H
K
x
G
G
 
N
G
 
A
P
 
M
L
 
L
S
 
T
Q
 
D
G
 
G
I
 
Y
V
 
Q
H
 
D
G
 
G
Q
 
T
R
 
I
V
 
I
T
 
E
C
|
C
P
 
P
L
x
F
H
|
H
S
 
G
W
 
G
N
 
S
I
 
F
E
 
D
L
 
I
A
 
A
S
 
T
G
 
G
E
 
A
A
 
A
V
 
K
A
 
A
-
 
F
P
 
P
D
 
C
Q
 
Q
G
 
I
C
 
P
T
 
I
A
 
K
R
 
T
F
 
Y
Q
 
P
V
 
V
K
 
T
V
 
I
E
 
E
D
 
D
G
 
G
R
 
W
V
 
V
W
 
C
L
 
I

4qdfB Crystal structure of apo ksha5 and ksha1 in complex with 1,4-30q-coa from r. Rhodochrous (see paper)
40% identity, 44% coverage: 25:69/102 of query aligns to 29:73/357 of 4qdfB

query
sites
4qdfB
G
 
G
G
 
T
D
 
K
I
 
L
A
 
V
V
 
V
F
 
W
R
 
A
T
 
D
D
 
S
G
 
N
D
 
D
A
 
E
V
 
I
F
 
R
A
 
I
L
 
L
H
 
D
D
 
A
K
 
Y
C
|
C
P
 
R
H
|
H
K
x
M
G
 
G
G
 
G
P
 
D
L
 
L
S
 
S
Q
 
Q
G
 
G
I
 
T
V
 
V
H
 
K
G
 
G
Q
 
D
R
 
E
V
 
I
T
 
A
C
|
C
P
 
P
L
x
F
H
|
H
S
 
D
W
|
W

Sites not aligning to the query:

F1CMX0 3-ketosteroid-9-alpha-monooxygenase, oxygenase component; 3-ketosteroid-9-alpha-hydroxylase, oxygenase component; KSH; Androsta-1,4-diene-3,17-dione 9-alpha-hydroxylase; Rieske-type oxygenase; RO; EC 1.14.15.30 from Rhodococcus rhodochrous (see paper)
40% identity, 44% coverage: 25:69/102 of query aligns to 48:92/394 of F1CMX0

query
sites
F1CMX0
G
 
G
G
 
T
D
 
K
I
 
L
A
 
V
V
 
V
F
 
W
R
 
A
T
 
D
D
 
S
G
 
N
D
 
D
A
 
E
V
 
I
F
 
R
A
 
I
L
 
L
H
 
D
D
 
A
K
 
Y
C
|
C
P
 
R
H
|
H
K
 
M
G
 
G
G
 
G
P
 
D
L
 
L
S
 
S
Q
 
Q
G
 
G
I
 
T
V
 
V
H
 
K
G
 
G
Q
 
D
R
 
E
V
 
I
T
 
A
C
|
C
P
 
P
L
 
F
H
|
H
S
 
D
W
 
W

Sites not aligning to the query:

6vshC Crystal structure of apo dicamba monooxygenase (see paper)
31% identity, 83% coverage: 16:100/102 of query aligns to 22:110/320 of 6vshC

query
sites
6vshC
L
 
L
G
 
G
S
 
R
R
 
T
V
 
I
V
 
L
Q
 
D
H
 
T
P
 
P
G
 
-
G
 
-
D
 
-
I
 
L
A
 
A
V
 
L
F
 
Y
R
 
R
T
 
Q
D
 
P
G
 
D
D
 
G
A
 
V
V
 
V
F
 
A
A
 
A
L
 
L
H
 
L
D
 
D
K
 
I
C
|
C
P
 
P
H
|
H
K
 
R
G
 
F
G
 
A
P
 
P
L
 
L
S
 
S
Q
 
D
G
 
G
I
 
I
V
 
L
H
 
V
G
 
N
Q
 
G
R
 
H
V
 
L
T
 
Q
C
|
C
P
 
P
L
x
Y
H
|
H
S
 
G
W
x
L
N
 
E
I
 
F
E
 
D
L
 
-
A
 
G
S
 
G
G
 
G
E
 
Q
A
 
C
V
 
V
A
 
H
P
 
N
D
 
P
Q
 
H
G
 
G
C
 
N
T
 
G
A
 
A
R
 
R
-
 
P
-
 
A
-
 
S
-
 
L
-
 
N
-
 
V
-
 
R
-
 
S
F
 
F
Q
 
P
V
 
V
K
 
V
V
 
E
E
 
R
D
 
D
G
 
A
R
 
L
V
 
I
W
 
W
L
 
I

3gobA Crystal structure of dicamba monooxygenase with non-heme cobalt and dcsa (see paper)
31% identity, 83% coverage: 16:100/102 of query aligns to 23:111/342 of 3gobA

query
sites
3gobA
L
 
L
G
 
G
S
 
R
R
 
T
V
 
I
V
 
L
Q
 
D
H
 
T
P
 
P
G
 
-
G
 
-
D
 
-
I
 
L
A
 
A
V
 
L
F
 
Y
R
 
R
T
 
Q
D
 
P
G
 
D
D
 
G
A
 
V
V
 
V
F
 
A
A
 
A
L
 
L
H
 
L
D
 
D
K
 
I
C
|
C
P
 
P
H
|
H
K
x
R
G
 
F
G
 
A
P
 
P
L
 
L
S
 
S
Q
 
D
G
 
G
I
 
I
V
 
L
H
 
V
G
 
N
Q
 
G
R
 
H
V
 
L
T
 
Q
C
|
C
P
 
P
L
x
Y
H
|
H
S
 
G
W
x
L
N
 
E
I
 
F
E
 
D
L
 
-
A
 
G
S
 
G
G
 
G
E
 
Q
A
 
C
V
 
V
A
 
H
P
 
N
D
 
P
Q
 
H
G
 
G
C
 
N
T
 
G
A
 
A
R
 
R
-
 
P
-
 
A
-
 
S
-
 
L
-
 
N
-
 
V
-
 
R
-
 
S
F
 
F
Q
 
P
V
 
V
K
 
V
V
 
E
E
 
R
D
 
D
G
 
A
R
 
L
V
 
I
W
 
W
L
 
I

Sites not aligning to the query:

3gb4A Crystal structure of dicamba monooxygenase with non-heme cobalt and dicamba (see paper)
31% identity, 83% coverage: 16:100/102 of query aligns to 22:110/341 of 3gb4A

query
sites
3gb4A
L
 
L
G
 
G
S
 
R
R
 
T
V
 
I
V
 
L
Q
 
D
H
 
T
P
 
P
G
 
-
G
 
-
D
 
-
I
 
L
A
 
A
V
 
L
F
 
Y
R
 
R
T
 
Q
D
 
P
G
 
D
D
 
G
A
 
V
V
 
V
F
 
A
A
 
A
L
 
L
H
 
L
D
 
D
K
 
I
C
|
C
P
 
P
H
|
H
K
x
R
G
 
F
G
 
A
P
 
P
L
 
L
S
 
S
Q
 
D
G
 
G
I
 
I
V
 
L
H
 
V
G
 
N
Q
 
G
R
 
H
V
 
L
T
 
Q
C
|
C
P
 
P
L
x
Y
H
|
H
S
 
G
W
x
L
N
 
E
I
 
F
E
 
D
L
 
-
A
 
G
S
 
G
G
 
G
E
 
Q
A
 
C
V
 
V
A
 
H
P
 
N
D
 
P
Q
 
H
G
 
G
C
 
N
T
 
G
A
 
A
R
 
R
-
 
P
-
 
A
-
 
S
-
 
L
-
 
N
-
 
V
-
 
R
-
 
S
F
 
F
Q
 
P
V
 
V
K
 
V
V
 
E
E
 
R
D
 
D
G
 
A
R
 
L
V
 
I
W
 
W
L
 
I

Sites not aligning to the query:

Q5S3I3 Dicamba O-demethylase, oxygenase component; Dicamba monooxygenase; DMO; Three-component Rieske non-heme iron oxygenase system; EC 1.14.15.- from Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas maltophilia) (see 3 papers)
31% identity, 83% coverage: 16:100/102 of query aligns to 22:110/339 of Q5S3I3

query
sites
Q5S3I3
L
 
L
G
 
G
S
 
R
R
 
T
V
 
I
V
 
L
Q
 
D
H
 
T
P
 
P
G
 
-
G
 
-
D
 
-
I
 
L
A
 
A
V
 
L
F
 
Y
R
 
R
T
 
Q
D
 
P
G
 
D
D
 
G
A
 
V
V
 
V
F
 
A
A
 
A
L
 
L
H
 
L
D
 
D
K
 
I
C
|
C
P
 
P
H
|
H
K
 
R
G
 
F
G
 
A
P
 
P
L
 
L
S
 
S
Q
 
D
G
 
G
I
 
I
V
 
L
H
 
V
G
 
N
Q
 
G
R
 
H
V
 
L
T
 
Q
C
|
C
P
 
P
L
 
Y
H
|
H
S
 
G
W
 
L
N
 
E
I
 
F
E
 
D
L
 
-
A
 
G
S
 
G
G
 
G
E
 
Q
A
 
C
V
 
V
A
 
H
P
 
N
D
 
P
Q
 
H
G
 
G
C
 
N
T
 
G
A
 
A
R
 
R
-
 
P
-
 
A
-
 
S
-
 
L
-
 
N
-
 
V
-
 
R
-
 
S
F
 
F
Q
 
P
V
 
V
K
 
V
V
 
E
E
 
R
D
 
D
G
 
A
R
 
L
V
 
I
W
 
W
L
 
I

Sites not aligning to the query:

Query Sequence

>Dsui_1826 FitnessBrowser__PS:Dsui_1826
MSQWKNLCALEDIPLLGSRVVQHPGGDIAVFRTDGDAVFALHDKCPHKGGPLSQGIVHGQ
RVTCPLHSWNIELASGEAVAPDQGCTARFQVKVEDGRVWLQA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory