Comparing Dsui_2006 FitnessBrowser__PS:Dsui_2006 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
Q92911 Sodium/iodide cotransporter; Na(+)/I(-) cotransporter; Natrium iodide transporter; Sodium-iodide symporter; Na(+)/I(-) symporter; Solute carrier family 5 member 5 from Homo sapiens (Human) (see 3 papers)
30% identity, 24% coverage: 62:225/680 of query aligns to 42:202/643 of Q92911
Sites not aligning to the query:
P07117 Sodium/proline symporter; Proline carrier; Proline permease; Propionate transporter from Escherichia coli (strain K12) (see 4 papers)
30% identity, 30% coverage: 475:676/680 of query aligns to 309:491/502 of P07117
Sites not aligning to the query:
Q9NY91 Probable glucose sensor protein SLC5A4; Solute carrier family 5 member 4 from Homo sapiens (Human) (see paper)
27% identity, 31% coverage: 69:281/680 of query aligns to 58:264/659 of Q9NY91
Sites not aligning to the query:
Q8N695 Sodium-coupled monocarboxylate transporter 1; Apical iodide transporter; Electrogenic sodium monocarboxylate cotransporter; Sodium iodide-related cotransporter; Solute carrier family 5 member 8 from Homo sapiens (Human) (see 3 papers)
25% identity, 28% coverage: 39:227/680 of query aligns to 4:202/610 of Q8N695
Sites not aligning to the query:
>Dsui_2006 FitnessBrowser__PS:Dsui_2006
MPTAKGFRQQLKRYYLLYTVGFLAFVAVLAFLEHLGLPPRWIGYAFLLFTILIYATIGVM
SRTADVSEYYVAGRRVPALFNGMATGADWMSAASFIGMAGTLYLTGYQGLAYIMGWTGGY
VLVALFLAPYLRKFGQYTIPDFLAVRYGGNAPRLVGVAAAIIASFVYVVAQIYGVGLITS
RFVSLQFEIGVFVGLAGILVCSFLGGMRAVTWTQVAQYVILIIAYVTPVALLSFQITSVP
VPQLVYGEVLQEVGKLEEKLFETPAEQEVRGLYRERADAYYEKIMRLPVSLAEERQRLTM
RINALKEENAPMREVVALERLRRDLPANAEEARERWDAAMHAAADRGAMPIRHAEAFPGR
SEAESSAARLNFLTLMFCLMVGTAALPHVLMRYYTTPTVKEARESVTWSLFFILLLYFTA
PAYAVFAKYEVYSTLINTPIAHLPSWVAAWGKVGLVAIEDINHDGLLQLAELSLNPDVIV
LATPEIAGLPYVISGLVAAGGLAAALSTADGLLLTIAGSLSHDVYYKIIQPRASTQWRLV
ISKSLLLVTAVLAATVAAQRPATILYMVAWAFSIAAAAFFPALVIGIFWKRANRAGAVSG
MVVGLLITVYYMVRVQFDSVPWLGLRGIGMEPWFGIQSTSAGVWGVPAGFLTIVVVSLLT
KPPSREVQDFVEQVHYPQLR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory