SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_2103 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6wnmA The structure of pf4r from a superinfective isolate of the filamentous phage pf4 of pseudomonas aeruginosa pa01 (see paper)
31% identity, 58% coverage: 27:77/88 of query aligns to 29:79/79 of 6wnmA

query
sites
6wnmA
W
 
W
R
 
K
D
 
S
V
 
V
C
 
S
L
 
K
E
 
G
R
 
A
K
 
I
R
 
R
A
 
V
T
 
S
A
 
T
E
 
E
H
 
E
L
 
I
E
 
D
A
 
V
I
 
L
G
 
V
R
x
K
L
 
I
W
 
F
P
 
P
E
 
N
Y
 
Y
S
 
A
L
 
L
W
 
W
L
 
I
L
 
A
T
 
S
G
 
G
R
 
S
T
 
I
Q
 
A
S
 
P
E
 
E
S
 
V
G
 
G
Q
 
Q
T
 
T
S
 
S
P
 
P
E
 
D
L
 
Y
E
 
D
Q
 
E
L
 
A
K
 
N
L
 
L

Sites not aligning to the query:

Query Sequence

>Dsui_2103
MVVAAKTNPLRKYKELEEMTGINATSWRDVCLERKRATAEHLEAIGRLWPEYSLWLLTGR
TQSESGQTSPELEQLKLLQENLGKRSAD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory