SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_3244 FitnessBrowser__PS:Dsui_3244 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

7d54A Crstal structure msgatase with gln (see paper)
33% identity, 53% coverage: 65:188/236 of query aligns to 79:193/242 of 7d54A

query
sites
7d54A
W
 
W
I
 
V
D
 
T
H
 
A
T
 
E
C
 
M
A
 
D
L
 
M
I
 
M
R
 
R
S
 
K
A
 
A
V
 
A
A
 
D
A
 
A
G
 
G
I
 
V
P
 
G
V
 
I
L
 
L
G
 
G
H
 
V
C
|
C
L
 
F
G
 
G
G
 
G
Q
 
Q
L
 
L
M
 
L
A
 
A
K
 
Q
A
 
T
L
 
F
G
 
G
G
 
G
R
 
S
V
 
V
T
 
A
P
 
R
N
 
A
P
 
E
I
 
T
K
 
A
E
 
E
I
 
V
G
 
G
W
 
W
G
 
F
T
 
E
A
 
L
R
 
D
I
 
T
E
 
D
E
 
D
G
 
A
E
 
G
I
 
L
-
 
I
-
 
A
P
 
P
G
 
G
H
 
P
W
 
W
F
 
-
N
 
-
G
 
-
L
 
-
G
 
-
G
 
-
E
 
-
V
 
-
T
 
-
V
 
-
F
 
F
Q
 
Q
W
|
W
H
 
H
G
 
F
E
 
D
T
 
R
F
 
W
S
 
T
L
 
V
P
 
P
P
 
P
Q
 
G
A
 
A
V
 
T
R
 
E
L
 
I
L
 
A
T
 
R
N
 
T
D
 
S
F
 
-
C
 
R
A
 
S
N
 
S
Q
 
Q
M
 
A
F
 
F
A
 
V
L
 
L
G
 
G
P
 
R
H
 
A
L
 
L
A
 
A
M
 
L
Q
 
Q
C
 
F
H
 
H
V
 
P
E
 
E
M
 
V
T
 
D
P
 
V
E
 
D
L
 
L
I
 
L
A
 
E
T
 
G
W
|
W
S
 
L
S
 
A
D
 
D

Sites not aligning to the query:

2ywcA Crystal structure of gmp synthetase from thermus thermophilus in complex with xmp
38% identity, 42% coverage: 50:147/236 of query aligns to 46:134/475 of 2ywcA

query
sites
2ywcA
L
 
L
C
 
I
F
 
L
M
 
S
G
 
G
G
|
G
P
 
P
M
x
R
S
 
S
V
 
V
N
 
F
D
 
D
P
 
P
-
 
D
L
 
A
P
 
P
W
 
R
I
 
P
D
 
D
H
 
P
T
 
R
C
 
L
A
 
-
L
 
-
I
 
-
R
 
-
S
 
-
A
 
-
V
 
F
A
 
S
A
 
S
G
 
G
I
 
L
P
 
P
V
 
L
L
 
L
G
 
G
H
 
I
C
|
C
L
x
Y
G
 
G
G
 
M
Q
 
Q
L
 
L
M
 
L
A
 
A
K
 
Q
A
 
E
L
 
L
G
 
G
G
 
G
R
 
R
V
 
V
T
 
E
P
 
R
N
 
A
P
 
G
I
 
R
K
 
A
E
 
E
I
 
Y
G
 
G
W
 
K
G
 
A
T
 
L
A
 
L
R
 
T
I
 
R
E
 
H
E
 
E
G
 
G
E
 
P
I
 
L
P
 
-
G
 
-
H
 
-
W
 
-
F
 
F
N
 
R
G
 
G
L
 
L
G
 
E
G
 
G
E
 
E
V
 
V
T
 
Q
V
 
V
F
 
W
Q
 
M
W
 
S
H
 
H
G
 
Q
E
 
D
T
 
A
F
 
V
S
 
T
L
 
A
P
 
P
P
 
P

Sites not aligning to the query:

P49915 GMP synthase [glutamine-hydrolyzing]; GMP synthetase; Glutamine amidotransferase; EC 6.3.5.2 from Homo sapiens (Human) (see paper)
29% identity, 49% coverage: 27:142/236 of query aligns to 50:156/693 of P49915

query
sites
P49915
I
 
V
A
 
Q
W
 
S
E
 
E
L
 
I
I
 
F
P
 
P
V
 
L
D
 
E
A
 
T
G
 
P
A
 
A
P
 
-
V
 
F
P
 
A
A
 
I
S
 
K
P
 
E
E
 
Q
A
 
G
Y
 
F
A
 
R
G
 
A
L
 
I
C
 
I
F
 
I
M
 
S
G
 
G
G
 
G
P
 
P
M
 
N
S
 
S
V
 
V
N
 
Y
-
 
A
D
 
E
P
 
D
L
 
A
P
 
P
W
 
W
I
 
F
D
 
D
H
 
P
T
 
A
C
 
I
A
 
F
L
 
T
I
 
I
R
 
-
S
 
-
A
 
-
V
 
-
A
 
-
A
 
-
G
 
G
I
 
K
P
 
P
V
 
V
L
 
L
G
 
G
H
 
I
C
|
C
L
 
Y
G
 
G
G
 
M
Q
 
Q
L
 
M
M
 
M
A
 
N
K
 
K
A
 
V
L
 
F
G
 
G
G
 
G
R
 
T
V
 
V
T
 
H
P
 
K
N
 
K
P
 
S
I
 
V
K
 
R
E
 
E
I
 
D
G
 
G
W
 
V
G
 
F
T
 
N
A
 
I
R
 
S
I
 
V
E
 
D
E
 
N
G
 
-
E
 
-
I
 
-
P
 
T
G
 
C
H
 
S
W
 
L
F
 
F
N
 
R
G
 
G
L
 
L
G
 
Q
G
 
K
E
 
E
V
 
E
T
 
V
V
 
V
F
 
L
Q
 
L
W
 
T
H
 
H
G
 
G
E
 
D
T
 
S

Sites not aligning to the query:

Query Sequence

>Dsui_3244 FitnessBrowser__PS:Dsui_3244
MRPVAIFRHTPTEGPGYFATFLEGHGIAWELIPVDAGAPVPASPEAYAGLCFMGGPMSVN
DPLPWIDHTCALIRSAVAAGIPVLGHCLGGQLMAKALGGRVTPNPIKEIGWGTARIEEGE
IPGHWFNGLGGEVTVFQWHGETFSLPPQAVRLLTNDFCANQMFALGPHLAMQCHVEMTPE
LIATWSSDWADEARAAARHPAGQTPEQMVAEIEWRLPAMRQLADRLYGAWIANLRR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory