SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Dsui_3463 FitnessBrowser__PS:Dsui_3463 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
31% identity, 50% coverage: 117:252/272 of query aligns to 60:189/506 of A0A0H2ZQB9

query
sites
A0A0H2ZQB9
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Sites not aligning to the query:

Query Sequence

>Dsui_3463 FitnessBrowser__PS:Dsui_3463
MLKKLQAFAHGALVPVLVLILWEAGSRAGLFSEVLLPSPSAVAVKWWAYLLPTQDYVPGS
GSYFTWLISGELLHDAYSSLYRVIVGFIIGAGLALPLGLVMGANNRIYDLFNPLVQILRP
IPPIAYIPLAILWFGLGNPPSFFLIAIGAFFPVLMNTIAGVRHVDGIYLRAARNLGVNYW
TMFTRVILPASTPYILAGVRIGIGTAFIVVIVSEMIAVNDGLGFRILEAREFMWSDKIIA
GMITIGLLGLAIDTAVSRLNNHLLRWHRGLEH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory