SitesBLAST – Find functional sites

 

SitesBLAST

Comparing EX31_RS22465 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

6i7vD7 50S ribosomal protein L31 type B (see paper)
72% identity, 81% coverage: 1:68/84 of query aligns to 1:68/68 of 6i7vD7

query
sites
6i7vD7
M
|
M
K
|
K
P
 
P
T
 
N
I
 
I
H
|
H
P
 
P
A
 
E
Y
 
Y
R
 
R
T
 
T
V
 
V
V
 
V
F
 
F
H
 
H
D
 
D
T
 
T
S
 
S
A
 
V
D
 
D
E
 
E
Y
 
Y
F
 
F
K
 
K
V
 
I
G
 
G
S
 
S
T
 
T
I
 
I
S
 
K
T
 
T
D
 
D
R
 
R
T
 
E
I
 
I
E
 
E
L
 
L
E
 
D
G
 
G
A
 
V
T
 
T
Y
 
Y
P
 
P
Y
 
Y
I
 
V
S
 
T
I
 
I
E
 
D
V
 
V
S
 
S
S
 
S
A
 
K
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
K
Q
 
L
K
 
R
E
 
T
Y
 
V
S
 
A
K
 
S
E
 
E
G
 
G

7nhn4 50S ribosomal protein L31 type B (see paper)
53% identity, 93% coverage: 1:78/84 of query aligns to 1:79/79 of 7nhn4

query
sites
7nhn4
M
|
M
K
|
K
P
 
T
T
 
G
I
 
I
H
|
H
P
 
P
A
 
E
Y
 
Y
R
 
R
T
 
P
V
 
V
V
 
V
F
 
F
H
 
V
D
 
D
T
 
T
S
 
S
A
 
T
D
 
D
E
 
F
Y
 
K
F
 
F
K
 
L
V
 
S
G
 
G
S
 
S
T
 
T
I
 
K
S
 
S
T
 
S
D
 
S
R
 
E
T
 
T
I
 
I
E
 
K
L
 
W
E
 
E
-
 
D
G
 
G
A
 
N
T
 
E
Y
 
Y
P
 
P
Y
 
L
I
 
L
S
 
R
I
 
V
E
 
E
V
 
I
S
 
S
S
 
S
A
 
D
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
K
E
 
H
Y
 
A
S
 
T
K
 
A
E
 
D
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
K
F
 
Y
G
 
G

5myjB3 of 70S ribosome from Lactococcus lactis (see paper)
49% identity, 93% coverage: 1:78/84 of query aligns to 1:79/79 of 5myjB3

query
sites
5myjB3
M
|
M
K
|
K
P
 
Q
T
 
N
I
 
I
H
 
H
P
 
P
A
 
N
Y
 
Y
R
 
Q
T
 
P
V
 
V
V
 
V
F
 
F
H
 
M
D
 
D
T
 
T
S
 
T
A
 
T
D
 
G
E
 
Y
Y
 
K
F
 
F
K
 
L
V
 
T
G
 
G
S
 
S
T
 
T
I
 
K
S
 
G
T
 
S
D
 
K
R
 
E
T
 
T
I
 
V
E
 
E
L
 
W
E
 
E
-
 
D
G
 
G
A
 
N
T
 
T
Y
 
Y
P
 
P
Y
 
L
I
 
I
S
 
R
I
 
V
E
 
E
V
 
I
S
 
S
S
 
S
A
 
D
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
R
Q
 
Q
K
 
K
E
 
F
Y
 
Q
S
 
A
K
 
A
E
 
D
G
 
G
S
 
R
T
 
I
A
 
A
R
 
R
F
 
F
N
 
E
Q
 
K
R
 
K
F
 
Y
G
 
G

6o8z1 50S ribosomal protein L31 type B (see paper)
47% identity, 93% coverage: 1:78/84 of query aligns to 1:79/83 of 6o8z1

query
sites
6o8z1
M
|
M
K
|
K
P
 
Q
T
 
D
I
 
I
H
|
H
P
 
P
A
 
N
Y
 
Y
R
 
Q
T
 
P
V
 
V
V
 
V
F
 
F
H
 
M
D
 
D
T
 
S
S
 
T
A
 
T
D
 
G
E
 
F
Y
 
K
F
 
F
K
 
L
V
 
S
G
 
G
S
 
S
T
 
T
I
 
K
S
 
G
T
 
S
D
 
S
R
 
E
T
 
T
I
 
V
E
 
E
L
 
W
E
 
E
-
 
D
G
 
G
A
 
N
T
 
T
Y
 
Y
P
 
P
Y
 
L
I
 
L
S
 
R
I
 
V
E
 
E
V
 
V
S
 
T
S
 
S
A
 
D
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
R
Q
 
Q
K
 
K
E
 
F
Y
 
T
S
 
Q
K
 
A
E
 
D
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
K
F
 
Y
G
 
G

5li03 50S ribosomal protein L36 (see paper)
46% identity, 93% coverage: 1:78/84 of query aligns to 1:79/83 of 5li03

query
sites
5li03
M
|
M
K
|
K
P
 
Q
T
 
G
I
 
I
H
 
H
P
 
P
A
 
E
Y
 
Y
R
 
H
T
 
Q
V
 
V
V
 
I
F
 
F
H
 
L
D
 
D
T
 
T
S
 
T
A
 
T
D
 
N
E
 
F
Y
 
K
F
 
F
K
 
L
V
 
S
G
 
G
S
 
S
T
 
T
I
 
K
S
 
T
T
 
S
D
 
S
R
 
E
T
 
M
I
 
M
E
 
E
L
 
W
E
 
E
-
 
D
G
 
G
A
 
K
T
 
E
Y
 
Y
P
 
P
Y
 
V
I
 
I
S
 
R
I
 
L
E
 
D
V
 
I
S
 
S
S
 
S
A
 
D
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
R
Q
 
Q
K
 
K
E
 
F
Y
 
A
S
 
A
K
 
A
E
 
D
G
 
G
S
 
R
T
 
V
A
 
E
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
K
F
 
F
G
 
G

8uu93 Large ribosomal subunit protein bL35 (see paper)
49% identity, 92% coverage: 1:77/84 of query aligns to 1:70/70 of 8uu93

query
sites
8uu93
M
|
M
K
|
K
P
 
T
T
 
G
I
 
I
H
|
H
P
 
P
A
 
E
Y
 
Y
R
 
R
T
 
P
V
 
V
V
 
V
F
 
F
H
 
V
D
 
D
T
 
T
S
 
S
A
 
T
D
 
D
E
 
F
Y
 
K
F
 
F
K
 
L
V
 
S
G
 
G
S
 
S
T
 
T
I
 
K
S
 
S
T
 
S
D
 
S
R
 
E
T
 
T
I
 
I
E
 
K
L
 
W
E
 
E
-
 
D
G
 
G
A
 
N
T
 
E
Y
 
Y
P
 
P
Y
 
L
I
 
L
S
 
R
I
 
V
E
 
E
V
 
I
S
 
S
S
 
S
A
 
D
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
-
Q
 
-
K
 
-
E
 
-
Y
 
-
S
 
-
K
 
-
E
 
-
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
K
F
 
Y

8rd8fJ Small ribosomal subunit protein uS5 (see paper)
53% identity, 65% coverage: 1:55/84 of query aligns to 1:55/61 of 8rd8fJ

query
sites
8rd8fJ
M
|
M
K
x
R
P
 
K
T
 
D
I
 
I
H
|
H
P
 
P
A
 
D
Y
 
Y
R
 
H
T
 
D
V
 
V
V
 
L
F
 
F
H
 
H
D
 
D
T
 
T
S
 
N
A
 
A
D
 
D
E
 
V
Y
 
F
F
 
F
K
 
L
V
 
T
G
 
R
S
 
S
T
 
T
I
 
V
S
 
K
T
 
T
D
 
K
R
 
T
T
 
T
I
 
R
E
 
E
L
 
Y
E
 
E
G
 
G
A
 
S
T
 
E
Y
 
Y
P
 
P
Y
 
Y
I
 
Y
S
 
P
I
 
L
E
 
D
V
 
I
S
 
S
S
 
S
A
 
A
S
 
S
H
 
H
P
 
P

7p48Y ABC-F type ribosomal protection protein (see paper)
41% identity, 93% coverage: 1:78/84 of query aligns to 1:69/70 of 7p48Y

query
sites
7p48Y
M
|
M
K
|
K
P
 
Q
T
 
G
I
 
I
H
 
H
P
 
P
A
 
E
Y
 
Y
R
 
H
T
 
Q
V
 
V
V
 
I
F
 
F
H
 
L
D
 
D
T
 
T
S
 
T
A
 
T
D
 
N
E
 
F
Y
 
K
F
 
F
K
 
L
V
 
S
G
 
G
S
 
S
T
 
T
I
 
K
S
 
T
T
 
S
D
 
S
R
 
E
T
 
M
I
 
M
E
 
E
L
 
W
E
 
E
-
 
D
G
 
G
A
 
K
T
 
E
Y
 
Y
P
 
P
Y
 
V
I
 
I
S
 
R
I
 
L
E
 
D
V
 
I
S
 
S
S
 
S
A
 
D
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
-
K
 
-
Q
 
-
K
 
-
E
 
-
Y
 
-
S
 
-
K
 
-
E
 
-
G
 
-
S
 
R
T
 
V
A
 
E
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
K
F
 
F
G
 
G

7nhl4 50S ribosomal protein L32 (see paper)
39% identity, 90% coverage: 1:76/84 of query aligns to 1:59/59 of 7nhl4

query
sites
7nhl4
M
|
M
K
|
K
P
 
Q
T
 
G
I
|
I
H
|
H
P
 
P
A
 
E
Y
 
Y
R
 
H
T
 
Q
V
 
V
V
 
I
F
 
F
H
 
L
D
 
D
T
 
T
S
 
T
A
 
T
D
 
N
E
 
F
Y
 
K
F
 
F
K
 
L
V
 
S
G
 
G
S
 
S
T
 
T
I
 
K
S
 
T
T
 
-
D
 
-
R
 
-
T
 
-
I
 
-
E
 
-
L
 
-
E
 
-
G
 
-
A
 
-
T
 
-
Y
 
-
P
 
P
Y
 
V
I
 
I
S
 
R
I
 
L
E
 
D
V
 
I
S
 
S
S
 
S
A
 
D
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
R
Q
 
Q
K
 
K
E
 
-
Y
 
-
S
 
-
K
 
-
E
 
-
G
 
G
S
x
R
T
 
V
A
 
E
R
|
R
F
 
F
N
 
N
Q
 
K
R
x
K

8cd1Le phikz014 (see paper)
35% identity, 95% coverage: 1:80/84 of query aligns to 1:67/68 of 8cd1Le

query
sites
8cd1Le
M
|
M
K
|
K
P
 
A
T
 
D
I
 
I
H
|
H
P
 
P
A
 
T
Y
 
Y
R
 
E
T
 
A
V
 
I
V
 
-
F
 
-
H
 
-
D
 
-
T
 
-
S
 
-
A
 
-
D
 
-
E
 
-
Y
 
-
F
 
-
K
 
-
V
 
-
G
 
E
S
 
A
T
 
T
I
 
C
S
 
S
T
 
C
D
 
G
R
 
N
T
 
V
I
 
I
E
 
K
L
 
T
E
 
R
G
 
S
A
 
T
T
 
L
Y
 
C
P
 
K
Y
 
P
I
 
I
S
 
H
I
 
L
E
 
D
V
 
V
S
 
C
S
 
S
A
 
E
S
 
C
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
K
E
 
V
Y
 
L
S
 
D
K
 
T
E
 
G
G
 
G
S
 
R
T
 
I
A
 
D
R
|
R
F
 
F
N
 
K
Q
 
Q
R
|
R
F
 
F
G
 
G
S
 
V
F
 
F

6yst6 of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state (see paper)
32% identity, 92% coverage: 1:77/84 of query aligns to 1:64/66 of 6yst6

query
sites
6yst6
M
|
M
K
|
K
P
 
K
T
 
D
I
 
I
H
|
H
P
 
P
A
 
K
Y
 
Y
R
 
E
T
 
E
V
 
I
V
 
T
F
 
-
H
 
A
D
 
S
T
 
C
S
 
S
A
x
C
D
 
G
E
 
N
Y
 
V
F
 
M
K
 
K
V
 
I
G
 
R
S
 
S
T
 
T
I
 
V
S
 
G
T
 
H
D
 
D
R
 
-
T
 
-
I
 
-
E
 
-
L
 
-
E
 
-
G
 
-
A
 
-
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
L
S
 
N
I
 
L
E
 
D
V
 
V
S
 
C
S
 
S
A
x
K
S
x
C
H
 
H
P
 
P
Y
 
F
Y
 
F
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
R
E
 
D
Y
 
V
S
 
A
K
 
T
E
 
G
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
R
F
 
F

5afi6 Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM (see paper)
32% identity, 92% coverage: 1:77/84 of query aligns to 1:64/66 of 5afi6

query
sites
5afi6
M
|
M
K
|
K
P
 
K
T
 
D
I
 
I
H
|
H
P
 
P
A
 
K
Y
 
Y
R
 
E
T
 
E
V
 
I
V
 
T
F
 
-
H
 
A
D
 
S
T
x
C
S
 
S
A
x
C
D
 
G
E
 
N
Y
 
V
F
 
M
K
 
K
V
 
I
G
 
R
S
 
S
T
 
T
I
 
V
S
 
G
T
 
H
D
 
D
R
 
-
T
 
-
I
 
-
E
 
-
L
 
-
E
 
-
G
 
-
A
 
-
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
L
S
 
N
I
 
L
E
 
D
V
 
V
S
x
C
S
 
S
A
 
K
S
 
C
H
 
H
P
 
P
Y
 
F
Y
 
F
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
R
E
 
D
Y
 
V
S
 
A
K
 
T
E
 
G
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
R
F
 
F

5akaZ Em structure of ribosome-srp-ftsy complex in closed state (see paper)
32% identity, 92% coverage: 1:77/84 of query aligns to 1:64/70 of 5akaZ

query
sites
5akaZ
M
|
M
K
 
K
P
 
K
T
 
D
I
 
I
H
 
H
P
 
P
A
x
K
Y
|
Y
R
x
E
T
x
E
V
x
I
V
x
T
F
 
-
H
x
A
D
 
S
T
 
C
S
|
S
A
 
C
D
 
G
E
x
N
Y
x
V
F
 
M
K
 
K
V
x
I
G
x
R
S
 
S
T
|
T
I
x
V
S
x
G
T
x
H
D
 
D
R
 
-
T
 
-
I
 
-
E
 
-
L
 
-
E
 
-
G
 
-
A
 
-
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
L
S
x
N
I
x
L
E
 
D
V
 
V
S
 
C
S
 
S
A
 
K
S
 
C
H
 
H
P
 
P
Y
 
F
Y
x
F
T
 
T
G
 
G
K
 
K
Q
 
Q
K
x
R
E
 
D
Y
 
V
S
 
A
K
x
T
E
 
G
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
R
F
 
F

P0A7M9 Large ribosomal subunit protein bL31; 50S ribosomal protein L31 from Escherichia coli (strain K12) (see 2 papers)
32% identity, 92% coverage: 1:77/84 of query aligns to 1:64/70 of P0A7M9

query
sites
P0A7M9
M
 
M
K
 
K
P
 
K
T
 
D
I
 
I
H
 
H
P
 
P
A
x
K
Y
 
Y
R
 
E
T
 
E
V
 
I
V
 
T
F
 
-
H
 
A
D
 
S
T
x
C
S
 
S
A
x
C
D
 
G
E
 
N
Y
 
V
F
 
M
K
 
K
V
 
I
G
 
R
S
 
S
T
 
T
I
 
V
S
 
G
T
 
H
D
 
D
R
 
-
T
 
-
I
 
-
E
 
-
L
 
-
E
 
-
G
 
-
A
 
-
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
L
S
 
N
I
 
L
E
 
D
V
 
V
S
x
C
S
|
S
A
x
K
S
x
C
H
 
H
P
 
P
Y
 
F
Y
 
F
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
R
E
 
D
Y
 
V
S
 
A
K
 
T
E
 
G
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
R
F
 
F

7jila 50S ribosomal protein L15 (see paper)
43% identity, 68% coverage: 1:57/84 of query aligns to 1:52/52 of 7jila

query
sites
7jila
M
|
M
K
|
K
P
 
K
T
 
G
I
 
I
H
|
H
P
 
P
A
 
E
-
 
N
Y
 
Y
R
 
R
T
 
L
V
 
V
V
 
A
F
 
F
H
 
K
D
 
D
T
 
M
S
 
S
A
 
N
D
 
D
E
 
D
Y
 
V
F
 
F
K
 
-
V
 
-
G
 
-
S
 
-
T
 
-
I
 
-
S
 
I
T
 
T
D
 
K
R
 
S
T
 
T
I
 
A
E
 
E
L
 
V
E
 
D
G
 
G
A
 
V
T
 
E
Y
 
Y
P
 
P
Y
 
V
I
 
V
S
 
K
I
 
M
E
 
E
V
 
I
S
 
S
S
 
R
A
 
T
S
 
S
H
 
H
P
 
P
Y
 
F
Y
 
Y

Q03223 Large ribosomal subunit protein bL31; 50S ribosomal protein L31 from Bacillus subtilis (strain 168) (see paper)
31% identity, 93% coverage: 1:78/84 of query aligns to 1:64/66 of Q03223

query
sites
Q03223
M
 
M
K
 
K
P
 
A
T
 
G
I
 
I
H
 
H
P
 
P
A
 
N
Y
 
F
R
 
K
T
 
K
V
 
A
V
 
T
F
 
V
H
 
K
D
 
C
T
 
A
S
 
C
A
 
G
D
 
N
E
 
E
Y
 
-
F
 
F
K
 
E
V
 
T
G
 
G
S
 
S
T
 
V
I
 
K
S
 
E
T
 
E
D
 
-
R
 
-
T
 
-
I
 
-
E
 
-
L
 
-
E
 
-
G
 
-
A
 
-
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
V
S
 
R
I
 
V
E
 
E
V
 
I
S
x
C
S
 
S
A
 
E
S
x
C
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
R
Q
 
Q
K
 
K
E
 
F
Y
 
A
S
 
S
K
 
A
E
 
D
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
K
F
 
Y
G
 
G

3j9wB3 30S ribosomal protein uS9 (see paper)
31% identity, 93% coverage: 1:78/84 of query aligns to 1:64/64 of 3j9wB3

query
sites
3j9wB3
M
|
M
K
|
K
P
 
A
T
 
G
I
 
I
H
|
H
P
 
P
A
 
N
Y
 
F
R
 
K
T
 
K
V
 
A
V
 
T
F
 
V
H
 
K
D
 
C
T
 
A
S
 
C
A
 
G
D
 
N
E
 
E
Y
 
-
F
 
F
K
 
E
V
 
T
G
 
G
S
 
S
T
 
V
I
 
K
S
 
E
T
 
E
D
 
-
R
 
-
T
 
-
I
 
-
E
 
-
L
 
-
E
 
-
G
 
-
A
 
-
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
V
S
 
R
I
 
V
E
 
E
V
 
I
S
 
C
S
 
S
A
 
E
S
 
C
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
R
Q
 
Q
K
 
K
E
 
F
Y
 
A
S
 
S
K
 
A
E
 
D
G
 
G
S
 
R
T
 
V
A
 
D
R
 
R
F
 
F
N
 
N
Q
 
K
R
 
K
F
 
Y
G
 
G

9c4g4 Cutibacterium acnes 50s ribosomal subunit with clindamycin bound (see paper)
35% identity, 93% coverage: 1:78/84 of query aligns to 1:66/66 of 9c4g4

query
sites
9c4g4
M
 
M
K
 
K
P
 
Q
T
 
G
I
 
I
H
 
H
P
 
P
A
 
D
Y
 
Y
R
 
R
T
 
E
V
 
T
V
 
T
F
 
V
H
 
V
D
x
C
T
 
T
S
 
C
A
 
G
D
 
N
E
 
T
Y
 
F
F
 
-
K
 
-
V
 
-
G
 
-
S
 
-
T
 
-
I
 
-
S
 
-
T
 
T
D
 
T
R
 
R
T
 
S
I
 
T
E
 
S
L
 
Q
E
 
S
G
 
G
A
 
T
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
L
S
 
N
I
 
A
E
 
D
V
|
V
S
x
C
S
 
S
A
 
K
S
x
C
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
K
E
 
I
Y
 
L
S
 
D
K
 
A
E
 
G
G
 
G
S
 
R
T
 
V
A
 
A
R
 
R
F
 
F
N
 
E
Q
 
R
R
 
R
F
 
Y
G
 
G

8crx4 30S ribosomal protein S17 (see paper)
35% identity, 93% coverage: 1:78/84 of query aligns to 1:66/66 of 8crx4

query
sites
8crx4
M
|
M
K
|
K
P
 
Q
T
 
G
I
 
I
H
|
H
P
 
P
A
 
D
Y
 
Y
R
 
R
T
 
E
V
 
T
V
 
T
F
 
V
H
 
V
D
 
C
T
 
T
S
x
C
A
 
G
D
 
N
E
 
T
Y
 
F
F
 
-
K
 
-
V
 
-
G
 
-
S
 
-
T
 
-
I
 
-
S
 
-
T
 
T
D
 
T
R
 
R
T
 
S
I
 
T
E
 
S
L
 
Q
E
 
S
G
 
G
A
 
T
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
L
S
 
N
I
 
A
E
 
D
V
|
V
S
x
C
S
 
S
A
 
K
S
x
C
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
K
E
 
I
Y
 
L
S
 
D
K
 
A
E
 
G
G
 
G
S
 
R
T
 
V
A
 
A
R
|
R
F
 
F
N
 
E
Q
 
R
R
|
R
F
 
Y
G
 
G

5zeb2 50S ribosomal protein L33 1 (see paper)
38% identity, 93% coverage: 1:78/84 of query aligns to 1:66/66 of 5zeb2

query
sites
5zeb2
M
|
M
K
|
K
P
 
T
T
 
G
I
 
I
H
|
H
P
 
P
A
 
E
Y
 
Y
R
 
-
T
 
-
V
 
-
V
 
-
F
 
-
H
 
-
D
 
-
T
 
-
S
 
-
A
 
V
D
 
D
E
 
T
Y
 
T
F
 
V
K
 
Q
V
 
C
G
 
G
S
 
C
T
 
G
I
 
H
S
 
S
-
 
F
T
 
T
D
 
T
R
 
R
T
 
S
I
 
T
E
 
K
L
 
Q
E
 
S
G
 
G
A
 
T
T
 
-
Y
 
-
P
 
-
Y
 
-
I
 
I
S
 
V
I
 
V
E
 
E
V
 
V
S
 
C
S
 
S
A
 
Q
S
 
C
H
 
H
P
 
P
Y
 
F
Y
 
Y
T
 
T
G
 
G
K
 
K
Q
 
Q
K
 
K
E
 
I
Y
 
L
S
 
D
K
 
S
E
 
G
G
 
G
S
 
R
T
 
V
A
 
A
R
 
R
F
 
F
N
 
E
Q
 
K
R
 
R
F
 
Y
G
 
G

Query Sequence

>EX31_RS22465
MKPTIHPAYRTVVFHDTSADEYFKVGSTISTDRTIELEGATYPYISIEVSSASHPYYTGK
QKEYSKEGSTARFNQRFGSFLGKK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory