SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_0850 FitnessBrowser__Cola:Echvi_0850 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

2v6tB Crystal structure of a complex of pterin-4a-carbinolamine dehydratase from toxoplasma gondii with 7,8-dihydrobiopterin (see paper)
56% identity, 83% coverage: 11:73/76 of query aligns to 32:93/100 of 2v6tB

query
sites
2v6tB
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R
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K
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F
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F
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S
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D
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N
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P
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Y
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A
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M
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D

1dcpA Dcoh, a bifunctional protein-binding transcriptional coactivator, complexed with biopterin (see paper)
46% identity, 95% coverage: 4:75/76 of query aligns to 24:94/99 of 1dcpA

query
sites
1dcpA
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E
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D
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I
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F
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K
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V

P61459 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Rattus norvegicus (Rat) (see 2 papers)
46% identity, 95% coverage: 4:75/76 of query aligns to 29:99/104 of P61459

query
sites
P61459
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E
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D
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A
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F
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M
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T
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A
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A
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E
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K
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N
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Y
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V

Sites not aligning to the query:

P61457 Pterin-4-alpha-carbinolamine dehydratase; PHS; 4-alpha-hydroxy-tetrahydropterin dehydratase; Dimerization cofactor of hepatocyte nuclear factor 1-alpha; DCoH; Dimerization cofactor of HNF1; Phenylalanine hydroxylase-stimulating protein; Pterin carbinolamine dehydratase; PCD; EC 4.2.1.96 from Homo sapiens (Human) (see 6 papers)
46% identity, 95% coverage: 4:75/76 of query aligns to 29:99/104 of P61457

query
sites
P61457
E
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E
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N
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Sites not aligning to the query:

1f93A Crystal structure of a complex between the dimerization domain of hnf-1 alpha and the coactivator dcoh (see paper)
46% identity, 95% coverage: 4:75/76 of query aligns to 28:98/103 of 1f93A

query
sites
1f93A
E
 
E
K
 
G
N
 
R
D
 
D
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A
L
 
I
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F
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D
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F
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x
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A
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F
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M
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A
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K
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L
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P
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W
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N
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Q
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V

Query Sequence

>Echvi_0850 FitnessBrowser__Cola:Echvi_0850
MWEEKNDQLIRVFEFSDFQEAFAFMTRVAFLAEEQGHHPNWSNVYNSVTIALTTHDAGNK
VTDKDKKLAAAIDKLI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory