Comparing Echvi_1284 FitnessBrowser__Cola:Echvi_1284 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
58% identity, 90% coverage: 31:315/316 of query aligns to 1:292/292 of 2fn8A
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
39% identity, 87% coverage: 34:307/316 of query aligns to 3:274/274 of 2ioyA
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
40% identity, 86% coverage: 31:301/316 of query aligns to 1:268/271 of 1dbpA
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
41% identity, 80% coverage: 34:285/316 of query aligns to 5:256/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
41% identity, 80% coverage: 34:285/316 of query aligns to 5:256/287 of 4ry0A
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
38% identity, 88% coverage: 33:309/316 of query aligns to 10:282/284 of 7e7mC
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
37% identity, 85% coverage: 34:302/316 of query aligns to 5:269/270 of 4zjpA
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
30% identity, 89% coverage: 33:314/316 of query aligns to 10:295/296 of 4irxA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
30% identity, 80% coverage: 31:284/316 of query aligns to 2:263/287 of 5dteB
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
31% identity, 78% coverage: 35:279/316 of query aligns to 5:259/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
31% identity, 78% coverage: 35:279/316 of query aligns to 5:259/288 of 1gudA
Sites not aligning to the query:
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
31% identity, 76% coverage: 45:283/316 of query aligns to 37:283/318 of P39325
Sites not aligning to the query:
5ocpA The periplasmic binding protein component of the arabinose abc transporter from shewanella sp. Ana-3 bound to alpha and beta-l- arabinofuranose
29% identity, 78% coverage: 45:292/316 of query aligns to 14:267/302 of 5ocpA
Sites not aligning to the query:
2vk2A Crystal structure of a galactofuranose binding protein (see paper)
31% identity, 76% coverage: 45:283/316 of query aligns to 15:261/296 of 2vk2A
Sites not aligning to the query:
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
27% identity, 88% coverage: 33:309/316 of query aligns to 4:290/297 of 4ry9B
4ry9A Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
27% identity, 88% coverage: 33:309/316 of query aligns to 4:290/297 of 4ry9A
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
30% identity, 90% coverage: 28:311/316 of query aligns to 1:285/287 of 4yo7A
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
30% identity, 85% coverage: 35:302/316 of query aligns to 5:287/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
30% identity, 85% coverage: 35:302/316 of query aligns to 5:287/288 of 8wl9A
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
32% identity, 73% coverage: 71:301/316 of query aligns to 43:265/301 of 2x7xA
Sites not aligning to the query:
>Echvi_1284 FitnessBrowser__Cola:Echvi_1284
MKDITQNILIWCLPLLLLVGACESNSATETKGKVAVIVSTLNNPWFVVLAETAAKEAESL
GYEVSIFDSQNNTALENNHFENAITAGYQAILFNPTDAEGSVSNVTKASEAGIAVFCMDR
EVNSSLPTSQILSDNYAGCVSLGKYFVDQLDKSGNYVEILGLVGDNNTWNRSKGFHSVVG
HYPDLKMVAQQSADFDRNKAMEVMESILQVHRDIDAVFCGNDAMAMGAYQALKAAGLENQ
VMVFGFDGAADVVDAVKDGRIAATAMQFPKVMAKTAAQLADKYIQGERDFVKKLPVDVEL
VTLANVEHYAAYGKKE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory