Comparing Echvi_1333 Echvi_1333 ABC-type (unclassified) transport system, ATPase component to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
57% identity, 98% coverage: 2:239/243 of query aligns to 2:240/240 of 6mjpA
6mbnA Lptb e163q in complex with atp (see paper)
55% identity, 98% coverage: 3:239/243 of query aligns to 4:241/241 of 6mbnA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
56% identity, 97% coverage: 3:237/243 of query aligns to 3:238/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
56% identity, 97% coverage: 3:237/243 of query aligns to 3:238/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
56% identity, 95% coverage: 3:234/243 of query aligns to 3:235/235 of 6mhzA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
56% identity, 95% coverage: 3:233/243 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
56% identity, 95% coverage: 3:233/243 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
55% identity, 95% coverage: 3:232/243 of query aligns to 3:233/233 of 6b8bA
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 96% coverage: 2:235/243 of query aligns to 4:254/254 of 1g6hA
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
36% identity, 86% coverage: 15:224/243 of query aligns to 15:228/253 of 6z5uK
Sites not aligning to the query:
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
32% identity, 96% coverage: 2:234/243 of query aligns to 4:253/253 of 1g9xB
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
33% identity, 96% coverage: 1:234/243 of query aligns to 5:238/240 of 1ji0A
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
36% identity, 86% coverage: 15:224/243 of query aligns to 17:230/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
36% identity, 86% coverage: 15:224/243 of query aligns to 17:230/263 of 7d08B
Sites not aligning to the query:
7chaI Cryo-em structure of p.Aeruginosa mlafebd with amppnp (see paper)
33% identity, 91% coverage: 15:234/243 of query aligns to 16:241/262 of 7chaI
Sites not aligning to the query:
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 89% coverage: 6:222/243 of query aligns to 7:228/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 89% coverage: 6:222/243 of query aligns to 7:228/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 89% coverage: 6:222/243 of query aligns to 7:228/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
32% identity, 89% coverage: 6:222/243 of query aligns to 7:228/353 of Q97UY8
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
35% identity, 89% coverage: 6:222/243 of query aligns to 8:223/285 of 4yerA
>Echvi_1333 Echvi_1333 ABC-type (unclassified) transport system, ATPase component
MILRGENLIKIYKGRKVVNNISVEVEQGEIVGLLGPNGAGKTTSFYMIVGLIKPNSGKVF
LDKEEITPLPMYRRAKLGIGYLAQEASVFRKLSVEENIMAVLEMTNLPKAAQKEKMEELL
EEFSLTHVRKNLGMVLSGGERRRTEIARALAVDPKFVLLDEPFAGVDPIAVEEIQTIVAK
LKNKNIGILITDHNVNETLSITDRAYLMFEGKLLKAGTAEELAADEQVRKVYLGKHFELK
RKI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory