SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_1620 FitnessBrowser__Cola:Echvi_1620 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

2qlxA Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum in complex with l-rhamnose (see paper)
60% identity, 95% coverage: 6:104/104 of query aligns to 9:107/108 of 2qlxA

query
sites
2qlxA
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F
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L
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2qlwB Crystal structure of rhamnose mutarotase rhau of rhizobium leguminosarum (see paper)
60% identity, 95% coverage: 6:104/104 of query aligns to 9:107/108 of 2qlwB

query
sites
2qlwB
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L
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D
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1x8dA Crystal structure of e. Coli yiil protein containing l-rhamnose (see paper)
45% identity, 95% coverage: 6:104/104 of query aligns to 5:103/104 of 1x8dA

query
sites
1x8dA
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A
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P
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E
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L

P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12) (see paper)
45% identity, 95% coverage: 6:104/104 of query aligns to 5:103/104 of P32156

query
sites
P32156
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A
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L

7bywA Crystal structure of acidovorax avenae l-fucose mutarotase (l-fucose- bound form) (see paper)
21% identity, 98% coverage: 3:104/104 of query aligns to 1:107/108 of 7bywA

query
sites
7bywA
K
 
Q
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R
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H
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K
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L
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G
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Y
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M
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E
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A
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E
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V

Query Sequence

>Echvi_1620 FitnessBrowser__Cola:Echvi_1620
MTKQIAFKMKLLPGYEAEYEQRHREIWPELVKLLKDSGVQDYSIYLDRETSTLFAVQTVT
GDSNSQDLGNTTIVQKWWAYMADIMETNPDNSPVSLPLKEVFTL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory