Comparing Echvi_2498 FitnessBrowser__Cola:Echvi_2498 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
42% identity, 89% coverage: 21:227/232 of query aligns to 17:222/229 of 6z67B
Sites not aligning to the query:
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
42% identity, 89% coverage: 21:227/232 of query aligns to 17:222/230 of 6z4wA
Sites not aligning to the query:
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
42% identity, 89% coverage: 21:227/232 of query aligns to 17:222/230 of A0A0H2ZM82
8iddA Cryo-em structure of mycobacterium tuberculosis atp bound ftsex/ripc complex in peptidisc (see paper)
45% identity, 86% coverage: 24:223/232 of query aligns to 20:218/225 of 8iddA
Sites not aligning to the query:
8igqA Cryo-em structure of mycobacterium tuberculosis adp bound ftsex/ripc complex in peptidisc (see paper)
45% identity, 86% coverage: 24:223/232 of query aligns to 20:218/227 of 8igqA
Sites not aligning to the query:
A5U7B7 Cell division ATP-binding protein FtsE from Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) (see 2 papers)
45% identity, 86% coverage: 24:223/232 of query aligns to 19:217/229 of A5U7B7
8tzjA Cryo-em structure of vibrio cholerae ftse/ftsx complex (see paper)
46% identity, 89% coverage: 17:222/232 of query aligns to 12:217/220 of 8tzjA
P0A9R7 Cell division ATP-binding protein FtsE from Escherichia coli (strain K12) (see paper)
46% identity, 86% coverage: 24:222/232 of query aligns to 18:215/222 of P0A9R7
8w6iD Cryo-em structure of escherichia coli str k12 ftsex complex with atp- gamma-s in peptidisc
46% identity, 86% coverage: 24:222/232 of query aligns to 18:215/219 of 8w6iD
Sites not aligning to the query:
8hd0A Cell divisome spg hydrolysis machinery ftsex-envc
45% identity, 86% coverage: 24:222/232 of query aligns to 18:215/218 of 8hd0A
Sites not aligning to the query:
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
41% identity, 89% coverage: 24:229/232 of query aligns to 18:222/222 of 8i6rB
Sites not aligning to the query:
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
41% identity, 88% coverage: 23:227/232 of query aligns to 18:221/223 of 2pclA
7arlD Lolcde in complex with lipoprotein and adp (see paper)
41% identity, 87% coverage: 21:222/232 of query aligns to 19:220/222 of 7arlD
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 87% coverage: 21:222/232 of query aligns to 22:223/233 of P75957
7mdyC Lolcde nucleotide-bound
41% identity, 87% coverage: 21:222/232 of query aligns to 19:220/226 of 7mdyC
Sites not aligning to the query:
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
40% identity, 87% coverage: 21:222/232 of query aligns to 21:222/229 of 7v8iD
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 97% coverage: 7:231/232 of query aligns to 1:223/241 of 4u00A
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
33% identity, 87% coverage: 23:224/232 of query aligns to 22:222/592 of 5lj7A
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
33% identity, 87% coverage: 23:224/232 of query aligns to 22:222/615 of 5lilA
Sites not aligning to the query:
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
33% identity, 88% coverage: 23:226/232 of query aligns to 23:225/650 of 5ws4A
>Echvi_2498 FitnessBrowser__Cola:Echvi_2498
MVFSSEPVVRLDKACIFQGITAILQDVTFDIEKDEFVFLIGRTGSGKSSLLKTLYADLPL
KMGYGKISGYDLKEIKTKDVPFLRRKLGIVFQDFQLFTDRTVAENLYFVMRATGWKDKAK
MKTRMVEVLMRVGLGGAATKMPHQLSGGEQQRVVIARALLNHPSILLADEPTGNLDPEVA
DGIFKLFQEINKQGTAVLMATHNHDLLNKYPYRILKCEKGKLLDSKTTEIIK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory