SitesBLAST – Find functional sites

 

SitesBLAST

Comparing Echvi_2833 FitnessBrowser__Cola:Echvi_2833 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4rqoB Crystal structure of l-serine dehydratase from legionella pneumophila (see paper)
43% identity, 28% coverage: 6:69/225 of query aligns to 4:71/448 of 4rqoB

query
sites
4rqoB
S
 
S
V
 
V
F
 
F
D
 
D
M
 
L
I
 
F
G
 
S
P
 
-
V
 
I
M
 
G
I
 
I
G
 
G
P
 
P
S
 
S
S
 
S
S
 
S
H
 
H
T
 
T
A
 
V
G
 
G
V
 
P
V
 
M
R
 
L
I
 
A
A
 
A
R
 
N
A
 
A
A
 
F
I
 
L
K
 
Q
V
 
L
L
 
L
-
 
E
-
 
Q
G
 
K
G
 
N
I
 
L
P
 
F
D
 
D
D
 
K
A
 
T
V
 
Q
-
 
R
-
 
V
-
 
K
I
 
V
T
 
E
F
 
L
Y
 
Y
N
 
G
S
 
S
F
 
L
A
 
A
R
 
L
T
 
T
Y
 
G
E
 
K
G
 
G
H
 
H
G
 
G
S
 
T
D
 
D
K
 
K
A
 
A
I
 
I
I
 
L
G
 
N
G
 
G
L
 
L

Sites not aligning to the query:

Query Sequence

>Echvi_2833 FitnessBrowser__Cola:Echvi_2833
MTRKSSVFDMIGPVMIGPSSSHTAGVVRIARAAIKVLGGIPDDAVITFYNSFARTYEGHG
SDKAIIGGLMDLKTDDARIKQAFELAEARGLTYIFKSVGNASVFHPNTIKLNLTKGDRKV
EVIGESLGGGLINIKSIDGFHAEFSAQEHTLIIKADDVSGAIAFITSILAQEQANIATMS
VSRKGKRDMACHVIEMDSGLNAITIKYLESISWIHELIYIPDIDL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory